Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
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A. Feinberg | J. Potash | R. Irizarry | M. Webster | C. Ladd-Acosta | S. Sabunciyan | B. Wen | Zhijin Wu | C. Montano | P. Onyango | H. Cui | Kevin Gabo | Michael A Rongione | H. Ji | Bo Wen | Hong Ji | H. Cui
[1] A. Feinberg,et al. Comprehensive High‐Throughput Arrays for Relative Methylation (CHARM) , 2010, Current protocols in human genetics.
[2] O. Sieber,et al. Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice , 2008, Human molecular genetics.
[3] A. Feinberg,et al. SNP-specific array-based allele-specific expression analysis. , 2008, Genome research.
[4] S. Orkin,et al. Antagonism of FOG-1 and GATA factors in fate choice for the mast cell lineage , 2008, The Journal of experimental medicine.
[5] Jim Stalker,et al. A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci , 2008, PLoS biology.
[6] Kenta Nakai,et al. DBTSS: database of transcription start sites, progress report 2008 , 2007, Nucleic Acids Res..
[7] John M. Greally,et al. CG dinucleotide clustering is a species-specific property of the genome , 2007, Nucleic acids research.
[8] Li Zhang,et al. Genome-Wide Profiling of DNA Methylation Reveals a Class of Normally Methylated CpG Island Promoters , 2007, PLoS genetics.
[9] Robert Brown,et al. Inactivation of HOXA Genes by Hypermethylation in Myeloid and Lymphoid Malignancy is Frequent and Associated with Poor Prognosis , 2007, Clinical Cancer Research.
[10] Ivo G Gut,et al. DNA methylation analysis by pyrosequencing , 2007, Nature Protocols.
[11] K. Aldape,et al. Epigenome scans and cancer genome sequencing converge on WNK2, a kinase-independent suppressor of cell growth , 2007, Proceedings of the National Academy of Sciences.
[12] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[13] R. Spang,et al. Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues , 2007, Clinical Cancer Research.
[14] J. Rogers,et al. DNA methylation profiling of human chromosomes 6, 20 and 22 , 2006, Nature Genetics.
[15] Nazneen Rahman,et al. Truncating mutations in the Fanconi anemia J gene BRIP1 are low-penetrance breast cancer susceptibility alleles , 2006, Nature Genetics.
[16] Shoshana J. Wodak,et al. GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks , 2006, Bioinform..
[17] Sam Richman,et al. An online database for brain disease research , 2006, BMC Genomics.
[18] S. Baylin,et al. Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction? , 2006, Nature Reviews Cancer.
[19] James B. Mitchell,et al. Distinct effects on gene expression of chemical and genetic manipulation of the cancer epigenome revealed by a multimodality approach. , 2004, Cancer cell.
[20] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[21] A. Feinberg,et al. The history of cancer epigenetics , 2004, Nature Reviews Cancer.
[22] J. Kawai,et al. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[23] John D. Storey. The positive false discovery rate: a Bayesian interpretation and the q-value , 2003 .
[24] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[25] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[26] M. Ehrlich,et al. DNA methylation in cancer: too much, but also too little , 2002, Oncogene.
[27] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[28] John D. Storey,et al. Empirical Bayes Analysis of a Microarray Experiment , 2001 .
[29] N. Miller,et al. Frequent loss of imprinting of PEG1/MEST in invasive breast cancer. , 1999, Cancer research.
[30] Francisco Antequera,et al. CpG islands as genomic footprints of promoters that are associated with replication origins , 1999, Current Biology.
[31] M. Frommer,et al. CpG islands in vertebrate genomes. , 1987, Journal of molecular biology.
[32] A. Feinberg,et al. Hypomethylation distinguishes genes of some human cancers from their normal counterparts , 1983, Nature.
[33] Garrison Fh,et al. [History of cancer]. , 1926, Il Policlinico. Sezione pratica.
[34] A. Feinberg,et al. The epigenetic progenitor origin of human cancer , 2006, Nature Reviews Genetics.
[35] John Suckling,et al. Global, voxel, and cluster tests, by theory and permutation, for a difference between two groups of structural MR images of the brain , 1999, IEEE Transactions on Medical Imaging.
[36] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .