Discrete Simulations of Biochemical Dynamics

Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algorithms which transform populations of objects according to a mass partition principle, based on suitable generalizations of chemical laws. The definition of MP system is given and a new kind of regulation mechanism is outlined, for the construction of computational models from experimental data of given metabolic processes.

[1]  Vincenzo Manca,et al.  P systems with reaction maps , 2006, Int. J. Found. Comput. Sci..

[2]  Gheorghe Paun,et al.  Membrane Computing , 2002, Natural Computing Series.

[3]  Vincenzo Manca,et al.  MP Systems Approaches to Biochemical Dynamics: Biological Rhythms and Oscillations , 2006, Workshop on Membrane Computing.

[4]  Vincenzo Manca,et al.  P Systems for Biological Dynamics , 2006, Applications of Membrane Computing.

[5]  Gabriel Ciobanu,et al.  Applications of Membrane Computing , 2006, Applications of Membrane Computing.

[6]  Vincenzo Manca Metabolic P systems for biochemical dynamics , 2007 .

[7]  Pietro Hiram Guzzi,et al.  Mitotic Oscillators as MP Graphs , 2006, Workshop on Membrane Computing.

[8]  Vincenzo Manca,et al.  The metabolic algorithm for P systems: Principles and applications , 2008, Theor. Comput. Sci..

[9]  Vincenzo Manca,et al.  A Membrane System for the Leukocyte Selective Recruitment , 2003, Workshop on Membrane Computing.

[10]  Vincenzo Manca,et al.  Biological networks in metabolic P systems , 2008, Biosyst..

[11]  Gheorghe Paun,et al.  Applications of Membrane Computing (Natural Computing Series) , 2005 .

[12]  Vincenzo Manca,et al.  Discrete solutions to differential equations by metabolic P systems , 2007, Theor. Comput. Sci..

[13]  Florent Jacquemard,et al.  An Analysis of a Public Key Protocol with Membranes , 2005 .

[14]  Vincenzo Manca,et al.  Evolution and Oscillation in P Systems: Applications to Biological Phenomena , 2004, Workshop on Membrane Computing.