A Statistical Framework for Partial Volume Segmentation

Accurate brain tissue segmentation by intensity-based voxel classification of MR images is complicated by partial volume (PV) voxels that contain a mixture of two or more tissue types. In this paper, we present a statistical framework for PV segmentation that combines and extends existing techniques. We think of a partial volumed image as a downsampled version of a fictive higher-resolution image that does not contain partial voluming, and we estimate the model parameters of this underlying image using an Expectation-Maximization algorithm. This leads to an iterative approach that interleaves a statistical classification of the image voxels using spatial information and an according update of the model parameters. We illustrate the performance of the method on simulated data and on 2-D slices of real MR images. We demonstrate that the use of appropriate spatial models not only improves the classification, but is often indispensable for robust parameter estimation as well.

[1]  N. Metropolis,et al.  Equation of State Calculations by Fast Computing Machines , 1953, Resonance.

[2]  J. Alison Noble,et al.  An adaptive segmentation algorithm for time-of-flight MRA data , 1999, IEEE Transactions on Medical Imaging.

[3]  Koenraad Van Leemput,et al.  Automated segmentation of multiple sclerosis lesions by model outlier detection , 2001, IEEE Transactions on Medical Imaging.

[4]  Koenraad Van Leemput,et al.  Automated model-based tissue classification of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[5]  Zhengrong Liang,et al.  Parameter estimation and tissue segmentation from multispectral MR images , 1994, IEEE Trans. Medical Imaging.

[6]  H. Donald Gage,et al.  Statistical models of partial volume effect , 1995, IEEE Trans. Image Process..

[7]  Jerry L. Prince,et al.  Unsupervised partial volume estimation in single-channel image data , 2000, Proceedings IEEE Workshop on Mathematical Methods in Biomedical Image Analysis. MMBIA-2000 (Cat. No.PR00737).

[8]  Miguel Ángel,et al.  Morphometric analysis of brain structures in MRI , 1999 .

[9]  New York Dover,et al.  ON THE CONVERGENCE PROPERTIES OF THE EM ALGORITHM , 1983 .

[10]  D. M. Titterington,et al.  Comments on "Application of the Conditional Population-Mixture Model to Image Segmentation" , 1984, IEEE Trans. Pattern Anal. Mach. Intell..

[11]  P. Santago,et al.  Quantification of MR brain images by mixture density and partial volume modeling , 1993, IEEE Trans. Medical Imaging.

[12]  E. Ising Beitrag zur Theorie des Ferromagnetismus , 1925 .

[13]  Mohamed-Jalal Fadili,et al.  Brain tissue classification of magnetic resonance images using partial volume modeling , 2000, IEEE Transactions on Medical Imaging.

[14]  Reto Meuli,et al.  Robust parameter estimation of intensity distributions for brain magnetic resonance images , 1998, IEEE Transactions on Medical Imaging.

[15]  James C. Gee,et al.  Robust partial-volume tissue classification of cerebral MRI scans , 1997, Medical Imaging.

[16]  M. Stella Atkins,et al.  Segmentation of multiple sclerosis lesions in intensity corrected multispectral MRI , 1996, IEEE Trans. Medical Imaging.

[17]  D. Rubin,et al.  Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .

[18]  R. Kikinis,et al.  Quantitative follow‐up of patients with multiple sclerosis using MRI: Technical aspects , 1999, Journal of magnetic resonance imaging : JMRI.

[19]  Alan C. F. Colchester,et al.  Intensity-Based Object Extraction from 3D Medical Images Including a Correction of Partial Volume Errors , 1994, BMVC.

[20]  J. Besag Efficiency of pseudolikelihood estimation for simple Gaussian fields , 1977 .

[21]  D R Haynor,et al.  Partial volume tissue classification of multichannel magnetic resonance images-a mixel model. , 1991, IEEE transactions on medical imaging.

[22]  David H. Laidlaw,et al.  Partial-volume Bayesian classification of material mixtures in MR volume data using voxel histograms , 1997, IEEE Transactions on Medical Imaging.

[23]  Koenraad Van Leemput,et al.  Automated model-based bias field correction of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[24]  É. Moulines,et al.  Convergence of a stochastic approximation version of the EM algorithm , 1999 .

[25]  Benoit M. Dawant,et al.  Morphometric analysis of white matter lesions in MR images: method and validation , 1994, IEEE Trans. Medical Imaging.

[26]  G. C. Wei,et al.  A Monte Carlo Implementation of the EM Algorithm and the Poor Man's Data Augmentation Algorithms , 1990 .

[27]  Z Wu,et al.  A Bayesian approach to subvoxel tissue classification in NMR microscopic images of trabecular bone , 1994, Magnetic resonance in medicine.