A comprehensive evaluation of rodent malaria parasite genomes and gene expression
暂无分享,去创建一个
Ulrike Böhme | Martin Hunt | Oliver Billker | Mandy Sanders | Arnab Pain | Chris J Janse | Deirdre Cunningham | Thomas D Otto | Deirdre A. Cunningham | Jean Langhorne | Matthew Berriman | H. Stunnenberg | M. Berriman | A. Pain | C. Newbold | A. Holder | T. Otto | Martin Hunt | M. Sanders | C. Janse | A. Waters | O. Billker | U. Böhme | A. Jackson | J. Langhorne | B. Franke-Fayard | A. Erhart | Lauren Robertson | Shahid M. Khan | W. Hoeijmakers | Chris I Newbold | Hendrik G Stunnenberg | Anthony A Holder | Andrew P Waters | Solabomi A Ogun | S. Ogun | Andrew P Jackson | Blandine Franke-Fayard | Wieteke A M Hoeijmakers | Agnieszka A Religa | Lauren Robertson | Annette Erhart | Shahid M Khan | Agnieszka A. Religa
[1] Deirdre A. Cunningham,et al. A comprehensive evaluation of rodent malaria parasite genomes and gene expression , 2014, BMC Biology.
[2] S. Hoffman,et al. Two Plasmodium 6‐Cys family‐related proteins have distinct and critical roles in liver‐stage development , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[3] K. Matuschewski,et al. Post‐transcriptional silencing of UIS4 in Plasmodium berghei sporozoites is important for host switch , 2014, Molecular microbiology.
[4] A. Read,et al. Mosquito transmission, growth phenotypes and the virulence of malaria parasites , 2013, Malaria Journal.
[5] A. Read,et al. Quantifying variation in the potential for antibody-mediated apparent competition among nine genotypes of the rodent malaria parasite Plasmodium chabaudi , 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[6] K. Haldar,et al. Identification of a Plasmodium falciparum Phospholipid Transfer Protein* , 2013, The Journal of Biological Chemistry.
[7] Nansheng Chen,et al. Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis , 2013, BMC Genomics.
[8] M. Berriman,et al. Vector transmission regulates immune control of Plasmodium virulence , 2013, Nature.
[9] A. Cowman,et al. Role of Plasmepsin V in Export of Diverse Protein Families from the Plasmodium falciparum Exportome , 2013, Traffic.
[10] H. D. del Portillo,et al. A new computational approach redefines the subtelomeric vir superfamily of Plasmodium vivax , 2013, BMC Genomics.
[11] David G Hendrickson,et al. Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.
[12] M. Mann,et al. Proteomic and Genetic Analyses Demonstrate that Plasmodium berghei Blood Stages Export a Large and Diverse Repertoire of Proteins , 2012, Molecular & Cellular Proteomics.
[13] Darren J Obbard,et al. Molecular evolution and phylogenetics of rodent malaria parasites , 2012, BMC Evolutionary Biology.
[14] Steven A. Sullivan,et al. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade , 2012, Nature Genetics.
[15] A. Dash,et al. The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum , 2012, Nature Genetics.
[16] J. Rayner,et al. A Plasmodium Calcium-Dependent Protein Kinase Controls Zygote Development and Transmission by Translationally Activating Repressed mRNAs , 2012, Cell host & microbe.
[17] Samuel A. Assefa,et al. A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs , 2012, Nature Protocols.
[18] Deirdre A. Cunningham,et al. Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS) , 2012, BMC Genomics.
[19] H. D. del Portillo,et al. Functional analysis of Plasmodium vivax VIR proteins reveals different subcellular localizations and cytoadherence to the ICAM‐1 endothelial receptor , 2012, Cellular microbiology.
[20] B. J. Clark,et al. The mammalian START domain protein family in lipid transport in health and disease. , 2012, The Journal of endocrinology.
[21] A. Craig,et al. The Role of Animal Models for Research on Severe Malaria , 2012, PLoS pathogens.
[22] M. Mota,et al. A toolbox to study liver stage malaria. , 2011, Trends in parasitology.
[23] A. Vaughan,et al. A systematic analysis of the early transcribed membrane protein family throughout the life cycle of Plasmodium yoelii , 2011, Cellular microbiology.
[24] P. Ebbinghaus,et al. Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family , 2011, Malaria Journal.
[25] J. Wootton,et al. Linkage maps from multiple genetic crosses and loci linked to growth-related virulent phenotype in Plasmodium yoelii , 2011, Proceedings of the National Academy of Sciences.
[26] Kees-Jan Françoijs,et al. Linear amplification for deep sequencing , 2011, Nature Protocols.
[27] Thomas D. Otto,et al. RATT: Rapid Annotation Transfer Tool , 2011, Nucleic acids research.
[28] Deirdre A. Cunningham,et al. Targeted Disruption of py235ebp-1: Invasion of Erythrocytes by Plasmodium yoelii Using an Alternative Py235 Erythrocyte Binding Protein , 2011, PLoS pathogens.
[29] R. Carter,et al. Strain‐specific immunity induced by immunization with pre‐erythrocytic stages of Plasmodium chabaudi , 2011, Parasite immunology.
[30] D. Baker,et al. Malaria gametocytogenesis , 2010, Molecular and biochemical parasitology.
[31] S. Knott,et al. A single parasite gene determines strain-specific protective immunity against malaria: the role of the merozoite surface protein I. , 2010, International journal for parasitology.
[32] Matthew Berriman,et al. Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology , 2010, Bioinform..
[33] A. Vaughan,et al. That Was Then But This Is Now: Malaria Research in the Time of an Eradication Agenda , 2010, Science.
[34] M. Berriman,et al. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps , 2010, Genome Biology.
[35] Peter Preiser,et al. The pir multigene family of Plasmodium: antigenic variation and beyond. , 2010, Molecular and biochemical parasitology.
[36] P. Preiser,et al. Small variant surface antigens and Plasmodium evasion of immunity. , 2010, Future microbiology.
[37] J. Wiegant,et al. Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development , 2010, PLoS pathogens.
[38] T. J. Templeton,et al. The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum. , 2009, Molecular and biochemical parasitology.
[39] Thomas M. Keane,et al. ABACAS: algorithm-based automatic contiguation of assembled sequences , 2009, Bioinform..
[40] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[41] T. Tsuboi,et al. Single amino acid substitution in Plasmodium yoelii erythrocyte ligand determines its localization and controls parasite virulence , 2009, Proceedings of the National Academy of Sciences.
[42] R. Carter,et al. Gene encoding erythrocyte binding ligand linked to blood stage multiplication rate phenotype in Plasmodium yoelii yoelii , 2009, Proceedings of the National Academy of Sciences.
[43] R. Carter,et al. Strain-specific immunity may drive adaptive polymorphism in the merozoite surface protein 1 of the rodent malaria parasite Plasmodium chabaudi. , 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[44] R. Carter,et al. A study on pathogenicity and mosquito transmission success in the rodent malaria parasite Plasmodium chabaudi adami. , 2009, International journal for parasitology.
[45] J. Carlton,et al. Comparative evolutionary genomics of human malaria parasites. , 2008, Trends in parasitology.
[46] Karsten M. Borgwardt,et al. The genome of the simian and human malaria parasite Plasmodium knowlesi , 2008, Nature.
[47] Matthew Berriman,et al. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database , 2008, Bioinform..
[48] J. Rougemont,et al. A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.
[49] M. Mota,et al. Interactions of the malaria parasite and its mammalian host. , 2008, Current Opinion in Microbiology.
[50] Deepak Gaur,et al. Erythrocyte binding protein PfRH5 polymorphisms determine species-specific pathways of Plasmodium falciparum invasion. , 2008, Cell host & microbe.
[51] Kevin Marsh,et al. Immunity to malaria: more questions than answers , 2008, Nature Immunology.
[52] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[53] A. Read,et al. Experimental manipulation of immune-mediated disease and its fitness costs for rodent malaria parasites , 2008, BMC Evolutionary Biology.
[54] Yingyao Zhou,et al. Evidence-Based Annotation of the Malaria Parasite's Genome Using Comparative Expression Profiling , 2008, PloS one.
[55] R. Carter,et al. Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite. , 2008, Molecular and biochemical parasitology.
[56] C. Pipper,et al. [''R"--project for statistical computing]. , 2008, Ugeskrift for laeger.
[57] Xinxia Peng,et al. A combined transcriptome and proteome survey of malaria parasite liver stages , 2008, Proceedings of the National Academy of Sciences.
[58] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[59] Neil Hall,et al. Regulation of Sexual Development of Plasmodium by Translational Repression , 2006, Science.
[60] C. Janse,et al. Plasmodium post-genomics: better the bug you know? , 2006, Nature Reviews Microbiology.
[61] R. Carter,et al. Mixed Strain Infections and Strain-Specific Protective Immunity in the Rodent Malaria Parasite Plasmodium chabaudi chabaudi in Mice , 2006, Infection and Immunity.
[62] J. Langhorne,et al. Insights into the immunopathogenesis of malaria using mouse models , 2006, Expert Reviews in Molecular Medicine.
[63] Neil Hall,et al. A Plasmodium Whole-Genome Synteny Map: Indels and Synteny Breakpoints as Foci for Species-Specific Genes , 2005, PLoS pathogens.
[64] Thomas Ludwig,et al. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees , 2005, Bioinform..
[65] R. Carter,et al. A genetic approach to the de novo identification of targets of strain-specific immunity in malaria parasites. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[66] John R Yates,et al. A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses , 2005, Science.
[67] Burkhard Morgenstern,et al. AUGUSTUS: a web server for gene finding in eukaryotes , 2004, Nucleic Acids Res..
[68] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[69] J. Derisi,et al. The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum , 2003, PLoS biology.
[70] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[71] Danny W. Wilson,et al. Ten families of variant genes encoded in subtelomeric regions of multiple chromosomes of Plasmodium chabaudi, a malaria species that undergoes antigenic variation in the laboratory mouse , 2003, Molecular microbiology.
[72] R. Sinden. Molecular interactions between Plasmodium and its insect vectors , 2002, Cellular microbiology.
[73] Jonathan E. Allen,et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii , 2002, Nature.
[74] P. Preiser,et al. The 235 kDa rhoptry protein of Plasmodium (yoelii) yoelii: function at the junction. , 2001, Molecular and biochemical parasitology.
[75] J. Adams,et al. Exploring the transcriptome of the malaria sporozoite stage , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[76] J. Wootton,et al. Mutations in the P. falciparum digestive vacuole transmembrane protein PfCRT and evidence for their role in chloroquine resistance. , 2000, Molecular cell.
[77] C. Janse,et al. Plasmodium berghei: the application of cultivation and purification techniques to molecular studies of malaria parasites. , 1995, Parasitology today.
[78] G. McConkey,et al. Mechanisms of pyrimethamine resistance in two different strains of Plasmodium berghei. , 1994, Molecular and biochemical parasitology.
[79] D. Kemp,et al. Sequence diversity of the erythrocyte membrane antigen 1 in various strains of Plasmodium chabaudi. , 1994, Molecular and biochemical parasitology.
[80] Mary R. Galinski,et al. A reticulocyte-binding protein complex of plasmodium vivax merozoites , 1992, Cell.
[81] A. Holder,et al. Identification of the gene for a Plasmodium yoelii rhoptry protein. Multiple copies in the parasite genome. , 1990, Molecular and biochemical parasitology.
[82] C. Frontali,et al. Organization of subtelomeric repeats in Plasmodium berghei , 1990, Molecular and cellular biology.
[83] C. Janse,et al. In vitro formation of ookinetes and functional maturity of Plasmodium berghei gametocytes , 1985, Parasitology.
[84] M. Berriman,et al. REAPR: a universal tool for genome assembly evaluation. , 2013, Genome biology.
[85] C. Janse,et al. Standardization in generating and reporting genetically modified rodent malaria parasites: the RMgmDB database. , 2013, Methods in molecular biology.
[86] Chris J Janse,et al. A genotype and phenotype database of genetically modified malaria-parasites. , 2011, Trends in parasitology.
[87] T. Gilberger,et al. Protein export in malaria parasites: do multiple export motifs add up to multiple export pathways? , 2010, Trends in parasitology.
[88] H. D. del Portillo,et al. Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily. , 2009, Trends in parasitology.
[89] C. Janse,et al. High-efficiency transfection and drug selection of genetically transformed blood stages of the rodent malaria parasite Plasmodium berghei , 2006, Nature Protocols.
[90] R. Ménard,et al. Manipulating the Plasmodium genome. , 2005, Current issues in molecular biology.
[91] R. Carter,et al. Linkage group selection: rapid gene discovery in malaria parasites. , 2005, Genome research.
[92] A. Waters,et al. Gene expression in Plasmodium berghei ookinetes and early oocysts in a co-culture system with mosquito cells. , 2005, Molecular and biochemical parasitology.
[93] BMC Biology , 2004 .
[94] J. Mullikin,et al. The phusion assembler. , 2003, Genome research.
[95] D. Walliker,et al. Evidence of cross-contamination among laboratory lines of Plasmodium berghei. , 1997, Molecular and biochemical parasitology.