Comparison of DNA yield and STR profiles from the diaphysis, mid‐diaphysis, and metaphysis regions of femur and tibia long bones

DNA testing of human bones is performed for identification when there is no remaining soft tissue, which often means the samples are old or environmentally compromised. Under these circumstances, it can be difficult to obtain a STR DNA profile. It is important to recover the highest quantity and quality of DNA for STR typing. This study compared the DNA recovery and STR profiles from five anatomical locations in five femora and five tibiae. These locations include the proximal metaphysis, proximal diaphysis, mid‐diaphysis, distal diaphysis, and distal metaphysis. Twenty‐five femur samples and 25 tibia samples were analyzed using the Qiagen Investigator Quantiplex Pro RGQ Kit for quantitating the extracted DNA and the Qiagen Investigator 24plex QS Kit for STR DNA typing. The highest DNA recovery of the five regions tested in both the femur and the tibia was from the midshaft diaphysis. The femur samples resulted in a significantly higher DNA recovery than the tibia samples as analyzed using a Kruskal–Wallis test (P = 0.002103). The midshaft diaphysis and distal diaphysis yielded the most complete STR DNA profiles in the femora, while the distal and proximal diaphysis yielded the most complete STR DNA profiles in the tibiae. There was no correlation between the amount of DNA recovered and the completeness of the STR DNA profile produced with low template extracts in this study.

[1]  D. Foran,et al.  Intra‐ and Inter‐Element Variability in Mitochondrial and Nuclear DNA from Fresh and Environmentally Exposed Skeletal Remains , , 2018, Journal of forensic sciences.

[2]  F. Noël,et al.  Organic extraction of bone lysates improves DNA purification with silica beads. , 2017, Forensic science international.

[3]  K. Elkins,et al.  Assessing DNA recovery from chewing gum , 2017, Medicine, science, and the law.

[4]  M. Stephenson,et al.  DNA Profiling Success Rates from Degraded Skeletal Remains in Guatemala , 2016, Journal of forensic sciences.

[5]  G. Calacal,et al.  Comparing different post-mortem human samples as DNA sources for downstream genotyping and identification. , 2015, Forensic science international. Genetics.

[6]  Kendra Sirak,et al.  Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone , 2015, PloS one.

[7]  B. Kemp,et al.  Mitochondrial DNA preservation across 3000-year-old northern fur seal ribs is not related to bone density: Implications for forensic investigations. , 2014, Forensic science international.

[8]  A. Mundorff,et al.  Examination of DNA yield rates for different skeletal elements at increasing post mortem intervals. , 2014, Forensic science international. Genetics.

[9]  D. Corach,et al.  A DNA extraction method of small quantities of bone for high-quality genotyping. , 2013, Forensic science international. Genetics.

[10]  Eske Willerslev,et al.  DNA in ancient bone - where is it located and how should we extract it? , 2012, Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

[11]  Takahide Yokoi,et al.  Evaluation of a new experimental kit for the extraction of DNA from bones and teeth using a non-powder method. , 2010, Legal medicine.

[12]  D. Foran,et al.  The Correlation Between Skeletal Weathering and DNA Quality and Quantity * , 2009, Journal of forensic sciences.

[13]  R. Guichón,et al.  Volumetric BMD Values of Archaeological Human Bone Remains with pQCT and DEXA , 2009 .

[14]  T. Parsons,et al.  Success rates of nuclear short tandem repeat typing from different skeletal elements. , 2007, Croatian medical journal.

[15]  Michael Hofreiter,et al.  Ancient DNA extraction from bones and teeth , 2007, Nature Protocols.

[16]  T. Parsons,et al.  Application of novel "mini-amplicon" STR multiplexes to high volume casework on degraded skeletal remains. , 2007, Forensic science international. Genetics.

[17]  M. Leney Sampling Skeletal Remains for Ancient DNA (aDNA): A Measure of Success , 2006 .

[18]  C. Mulligan Isolation and analysis of DNA from archaeological, clinical, and natural history specimens. , 2005, Methods in enzymology.

[19]  Suni M. Edson,et al.  Naming the Dead - Confronting the Realities of Rapid Identification of Degraded Skeletal Remains. , 2004, Forensic science review.

[20]  S Andelinović,et al.  DNA typing from skeletal remains: evaluation of multiplex and megaplex STR systems on DNA isolated from bone and teeth samples. , 2001, Croatian medical journal.

[21]  L. Snyder,et al.  Bone mineral density and survival of elements and element portions in the bones of the Crow Creek massacre victims. , 1997, American journal of physical anthropology.

[22]  M. Holland,et al.  A systematic approach to the sampling of dental DNA. , 1993, Journal of forensic sciences.