The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.
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Alan R Davidson | Adair L. Borges | Joseph Bondy-Denomy | A. Davidson | J. Bondy-Denomy | Adair L Borges | Joseph Bondy-Denomy
[1] You-Hee Cho,et al. A phage protein that inhibits the bacterial ATPase required for type IV pilus assembly , 2014, Proceedings of the National Academy of Sciences.
[2] A. Buckling,et al. The diversity-generating benefits of a prokaryotic adaptive immune system , 2016, Nature.
[3] Yan Zhang,et al. Naturally Occurring Off-Switches for CRISPR-Cas9 , 2016, Cell.
[4] Konstantin Severinov,et al. CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. , 2012, Molecular cell.
[5] Jay Shendure,et al. Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses , 2012, Cell.
[6] S. Ehrlich,et al. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. , 2005, Microbiology.
[7] Luke A. Gilbert,et al. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes , 2013, Cell.
[8] A. Davidson,et al. The phage tail tape measure protein, an inner membrane protein and a periplasmic chaperone play connected roles in the genome injection process of E. coli phage HK97 , 2015, Molecular microbiology.
[9] P. Taylor,et al. Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA. , 2002, Molecular cell.
[10] Adi Stern,et al. The phage‐host arms race: Shaping the evolution of microbes , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.
[11] D. Dryden,et al. DNA mimicry by proteins. , 2006, Biochemical Society transactions.
[12] S. Kuramitsu,et al. Transcription profile of Thermus thermophilus CRISPR systems after phage infection. , 2010, Journal of molecular biology.
[13] David S. Weiss,et al. A CRISPR-CAS System Mediates Bacterial Innate Immune Evasion and Virulence , 2013, Nature.
[14] Sylvain Moineau,et al. Bacteriophage resistance mechanisms , 2010, Nature Reviews Microbiology.
[15] G. O’Toole,et al. Interaction between Bacteriophage DMS3 and Host CRISPR Region Inhibits Group Behaviors of Pseudomonas aeruginosa , 2008, Journal of bacteriology.
[16] Forest Rohwer,et al. Viruses as Winners in the Game of Life. , 2016, Annual review of virology.
[17] Konstantin Severinov,et al. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system , 2012, Nature Communications.
[18] Tyson A. Clark,et al. Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9 , 2015, mBio.
[19] K. Datsenko,et al. Foreign DNA acquisition by the I-F CRISPR–Cas system requires all components of the interference machinery , 2015, Nucleic acids research.
[20] H. Krisch,et al. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. , 2007, Virology.
[21] Luciano A. Marraffini,et al. Degradation of Phage Transcripts by CRISPR-Associated RNases Enables Type III CRISPR-Cas Immunity , 2016, Cell.
[22] G. Evans,et al. Quorum Sensing Controls Adaptive Immunity through the Regulation of Multiple CRISPR-Cas Systems , 2016, Molecular cell.
[23] Mike Boots,et al. Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense , 2015, Current Biology.
[24] R. Barrangou,et al. Applications of CRISPR technologies in research and beyond , 2016, Nature Biotechnology.
[25] Courtney J. Robinson,et al. Prophage-mediated defence against viral attack and viral counter-defence , 2017, Nature Microbiology.
[26] Andrew Camilli,et al. A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity , 2013, Nature.
[27] Nevan J. Krogan,et al. Inhibition of CRISPR-Cas9 with Bacteriophage Proteins , 2017, Cell.
[28] C. Lo,et al. White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly , 2008, Proceedings of the National Academy of Sciences.
[29] George A. O'Toole,et al. Non-Identity-Mediated CRISPR-Bacteriophage Interaction Mediated via the Csy and Cas3 Proteins , 2011, Journal of bacteriology.
[30] Kira S. Makarova,et al. Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems , 2016, Science.
[31] M. Hochberg,et al. Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophages , 2014, Proceedings of the National Academy of Sciences.
[32] Jennifer A. Doudna,et al. Conformational control of DNA target cleavage by CRISPR–Cas9 , 2015, Nature.
[33] Sita J. Saunders,et al. An updated evolutionary classification of CRISPR–Cas systems , 2015, Nature Reviews Microbiology.
[34] Peter C. Fineran,et al. Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference , 2015, Nucleic acids research.
[35] K. Zhou,et al. Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. , 2009, Structure.
[36] R. Gutiérrez-Ríos,et al. The CRISPR/Cas Immune System Is an Operon Regulated by LeuO, H-NS, and Leucine-Responsive Regulatory Protein in Salmonella enterica Serovar Typhi , 2011, Journal of bacteriology.
[37] J. Banfield,et al. Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus , 2012, PloS one.
[38] Alan R Davidson,et al. To acquire or resist: the complex biological effects of CRISPR-Cas systems. , 2014, Trends in microbiology.
[39] A. Buckling,et al. Prophages mediate defense against phage infection through diverse mechanisms , 2016, The ISME Journal.
[40] U. Qimron,et al. The Escherichia coli CRISPR System Protects from λ Lysogenization, Lysogens, and Prophage Induction , 2010, Journal of bacteriology.
[41] Jennifer A. Doudna,et al. Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease , 2010, Science.
[42] Yan Zhou,et al. Structural basis of Cas3 inhibition by the bacteriophage protein AcrF3 , 2016, Nature Structural &Molecular Biology.
[43] Konstantin Severinov,et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence , 2011, Proceedings of the National Academy of Sciences.
[44] Alan R. Davidson,et al. A New Group of Phage Anti-CRISPR Genes Inhibits the Type I-E CRISPR-Cas System of Pseudomonas aeruginosa , 2014, mBio.
[45] J. García-Martínez,et al. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. , 2009, Microbiology.
[46] Peter C. Fineran,et al. Inactivation of CRISPR-Cas systems by anti-CRISPR proteins in diverse bacterial species , 2016, Nature Microbiology.
[47] J. Coppee,et al. Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile , 2013, PLoS genetics.
[48] Alan R. Davidson,et al. Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system , 2012, Nature.
[49] Chase L. Beisel,et al. Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression , 2014, Nucleic acids research.
[50] J. Vogel,et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III , 2011, Nature.
[51] L. You,et al. A CRISPR evolutionary arms race: structural insights into viral anti-CRISPR/Cas responses , 2016, Cell Research.
[52] Graham F Hatfull,et al. Bacteriophages and their genomes. , 2011, Current opinion in virology.
[53] R. Hendrix,et al. Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. , 2000, Journal of molecular biology.
[54] R. Hendrix,et al. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[55] R. Sorek,et al. BREX is a novel phage resistance system widespread in microbial genomes , 2015, The EMBO journal.
[56] George A. O'Toole,et al. The CRISPR/Cas Adaptive Immune System of Pseudomonas aeruginosa Mediates Resistance to Naturally Occurring and Engineered Phages , 2012, Journal of bacteriology.
[57] Daniel Mucida,et al. CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection. , 2012, Cell host & microbe.
[58] Sylvain Moineau,et al. Revenge of the phages: defeating bacterial defences , 2013, Nature Reviews Microbiology.
[59] Yuquan Wei,et al. Type I CRISPR-Cas targets endogenous genes and regulates virulence to evade mammalian host immunity , 2016, Cell Research.
[60] Wolf-Dietrich Hardt,et al. Phages and the Evolution of Bacterial Pathogens: from Genomic Rearrangements to Lysogenic Conversion , 2004, Microbiology and Molecular Biology Reviews.
[61] Scott Bailey,et al. In Vitro Reconstitution of an Escherichia coli RNA-guided Immune System Reveals Unidirectional, ATP-dependent Degradation of DNA Target* , 2013, The Journal of Biological Chemistry.
[62] Alan R. Davidson,et al. Multiple mechanisms for CRISPR–Cas inhibition by anti-CRISPR proteins , 2015, Nature.
[63] Philippe Horvath,et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA , 2010, Nature.
[64] B. Bassler,et al. Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system , 2016, Proceedings of the National Academy of Sciences.
[65] Kira S. Makarova,et al. Diversity and evolution of class 2 CRISPR–Cas systems , 2017, Nature Reviews Microbiology.
[66] K. Seed. Battling Phages: How Bacteria Defend against Viral Attack , 2015, PLoS pathogens.
[67] G Vergnaud,et al. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. , 2005, Microbiology.
[68] A. Davidson,et al. The moron comes of age , 2012, Bacteriophage.
[69] Kelli L. Palmer,et al. Multidrug-Resistant Enterococci Lack CRISPR-cas , 2010, mBio.
[70] Philippe Horvath,et al. Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus , 2007, Journal of bacteriology.
[71] R. Barrangou,et al. Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria , 2012, Proceedings of the National Academy of Sciences.
[72] Magnus Lundgren,et al. Efficient programmable gene silencing by Cascade , 2014, Nucleic acids research.
[73] Adrián Cazares,et al. Core and accessory genome architecture in a group of Pseudomonas aeruginosa Mu-like phages , 2014, BMC Genomics.
[74] G. O’Toole,et al. Clustered Regularly Interspaced Short Palindromic Repeat-Dependent, Biofilm-Specific Death of Pseudomonas aeruginosa Mediated by Increased Expression of Phage-Related Genes , 2015, mBio.
[75] G. Church,et al. CRISPR/Cas9-Mediated Phage Resistance Is Not Impeded by the DNA Modifications of Phage T4 , 2014, PloS one.
[76] A. Davidson,et al. The Bacteriophage HK97 gp15 Moron Element Encodes a Novel Superinfection Exclusion Protein , 2012, Journal of bacteriology.
[77] Jean-Baptiste Veyrieras,et al. Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa , 2015, mBio.
[78] Stan J. J. Brouns,et al. Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes , 2008, Science.
[79] Joshua S. Weitz,et al. CRISPR-Induced Distributed Immunity in Microbial Populations , 2014, PloS one.
[80] Asaf Levy,et al. CRISPR adaptation biases explain preference for acquisition of foreign DNA , 2015, Nature.
[81] L. Marraffini,et al. CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA , 2008, Science.
[82] Peter C. Fineran,et al. CRISPR–Cas systems: beyond adaptive immunity , 2014, Nature Reviews Microbiology.
[83] J. Krebs,et al. Arms races between and within species , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[84] G. O’Toole,et al. Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates , 2011, Microbiology.
[85] U. Qimron,et al. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli , 2012, Nucleic acids research.
[86] Luciano A. Marraffini,et al. Cas9 specifies functional viral targets during CRISPR-Cas adaptation , 2015, Nature.
[87] G. Hatfull. Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity , 2015, Journal of Virology.
[88] W. Arber,et al. Host Specificity of DNA Produced by Escherichia Coli I. Host controlled modification of bacteriophage λ , 1989 .
[89] Stan J. J. Brouns,et al. Cascade-mediated binding and bending of negatively supercoiled DNA , 2012, RNA biology.
[90] Luciano A. Marraffini,et al. Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting , 2014, Nature.
[91] J. García-Martínez,et al. Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements , 2005, Journal of Molecular Evolution.
[92] John H. White,et al. Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance , 2009, Nucleic acids research.
[93] W Arber,et al. Host specificity of DNA produced by Escherichia coli. 9. Host-controlled modification of bacteriophage fd. , 1966, Journal of molecular biology.
[94] J. Doudna,et al. A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity , 2012, Science.
[95] Stan J. J. Brouns,et al. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. , 2012, Annual review of genetics.
[96] A. Davidson,et al. When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness , 2014, Journal of Microbiology.
[97] T. Bickle,et al. Bacteriophage survival: multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts. , 1983, Microbiological reviews.
[98] D. Botstein. A THEORY OF MODULAR EVOLUTION FOR BACTERIOPHAGES * , 1980, Annals of the New York Academy of Sciences.
[99] Eric S. Lander,et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector , 2016, Science.
[100] R. Barrangou,et al. The three major types of CRISPR‐Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus , 2014, Molecular microbiology.
[101] K. Datsenko,et al. The action of Escherichia coli CRISPR–Cas system on lytic bacteriophages with different lifestyles and development strategies , 2017, Nucleic acids research.
[102] Luciano A. Marraffini,et al. CRISPR-Cas immunity in prokaryotes , 2015, Nature.
[103] Philippe Horvath,et al. Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus , 2007, Journal of bacteriology.
[104] H. Neve,et al. X‐ray structure of a superinfection exclusion lipoprotein from phage TP‐J34 and identification of the tape measure protein as its target , 2013, Molecular microbiology.
[105] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[106] Eugene V Koonin,et al. No evidence of inhibition of horizontal gene transfer by CRISPR–Cas on evolutionary timescales , 2015, The ISME Journal.
[107] Julian Parkhill,et al. Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. , 2008, Genome research.
[108] A. Davidson,et al. The solution structure of an anti-CRISPR protein , 2016, Nature Communications.
[109] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.