Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules
暂无分享,去创建一个
Pieter C. Dorrestein | Hosein Mohimani | Alexey Gurevich | Xuesong He | Neha Garg | Anna Edlund | Jeffrey S. McLean | P. Dorrestein | A. Gurevich | W. Shi | Xuesong He | J. McLean | A. Edlund | H. Mohimani | Neha Garg | Wenyuan Shi
[1] J. McLean,et al. Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy , 2008, The ISME Journal.
[2] W. Loesche,et al. Effect of pH upon sucrose and glucose catabolism by the various genogroups of Streptococcus mutans. , 1983, Journal of dental research.
[3] J. López-Bucio,et al. Transkingdom signaling based on bacterial cyclodipeptides with auxin activity in plants , 2011, Proceedings of the National Academy of Sciences.
[4] R. Kent,et al. Mutans Streptococci and Non-mutans Streptococci Acidogenic at Low pH, and in vitro Acidogenic Potential of Dental Plaque in Two Different Areas of the Human Dentition , 1991, Journal of dental research.
[5] W. R. Wikoff,et al. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites , 2009, Proceedings of the National Academy of Sciences.
[6] S. Grebe,et al. LC-MS/MS in the Clinical Laboratory - Where to From Here? , 2011, The Clinical biochemist. Reviews.
[7] Chonghuai Liu,et al. Melatonin-Producing Endophytic Bacteria from Grapevine Roots Promote the Abiotic Stress-Induced Production of Endogenous Melatonin in Their Hosts , 2016, Front. Plant Sci..
[8] M. Blaser,et al. The human microbiome: at the interface of health and disease , 2012, Nature Reviews Genetics.
[9] Blair J. Rossetti,et al. Biogeography of a human oral microbiome at the micron scale , 2016, Proceedings of the National Academy of Sciences.
[10] J. Merritt,et al. Mutanobactin A from the human oral pathogen Streptococcus mutans is a cross-kingdom regulator of the yeast-mycelium transition. , 2010, Organic & biomolecular chemistry.
[11] Michelle C. Moffitt,et al. Characterization of the Nodularin Synthetase Gene Cluster and Proposed Theory of the Evolution of Cyanobacterial Hepatotoxins , 2004, Applied and Environmental Microbiology.
[12] Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions , 2016, Genome Medicine.
[13] S. Goodison,et al. 16S ribosomal DNA amplification for phylogenetic study , 1991, Journal of bacteriology.
[14] Josep M. Guerrero,et al. Reactive Oxygen Intermediates, Molecular Damage, and Aging: Relation to Melatonin , 1998, Annals of the New York Academy of Sciences.
[15] S. Rice,et al. Quorum‐sensing cross talk: isolation and chemical characterization of cyclic dipeptides from Pseudomonas aeruginosa and other Gram‐negative bacteria , 1999, Molecular microbiology.
[16] Chengqi Yi,et al. Epitranscriptome sequencing technologies: decoding RNA modifications , 2016, Nature Methods.
[17] B. Poeggeler,et al. Potent Neuroprotective Properties against the Alzheimer β-Amyloid by an Endogenous Melatonin-related Indole Structure, Indole-3-propionic Acid* , 1999, The Journal of Biological Chemistry.
[18] M. Fischbach,et al. Small molecules from the human microbiota , 2015, Science.
[19] Kazuki Saito,et al. Potential of metabolomics as a functional genomics tool. , 2004, Trends in plant science.
[20] Neha Garg,et al. Dereplication of peptidic natural products through database search of mass spectra , 2016, Nature chemical biology.
[21] J. Belizário,et al. Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches , 2015, Front. Microbiol..
[22] A. Torres,et al. Enterohemorrhagic Escherichia coli Adhesins. , 2014, Microbiology spectrum.
[23] S. Mazmanian,et al. The gut microbiota shapes intestinal immune responses during health and disease , 2009, Nature Reviews Immunology.
[24] Pieter C. Dorrestein,et al. A mass spectrometry-guided genome mining approach for natural product peptidogenomics , 2011, Nature chemical biology.
[25] Gideon Rechavi,et al. The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA , 2016, Nature.
[26] A. Tilden,et al. Melatonin production in an aerobic photosynthetic bacterium: An evolutionarily early association with darkness , 1997, Journal of pineal research.
[27] Nigel W. Hardy,et al. Toward Supportive Data Collection Tools for Plant Metabolomics[w] , 2005, Plant Physiology.
[28] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[29] R. Knight,et al. Molecular cartography of the human skin surface in 3D , 2015, Proceedings of the National Academy of Sciences.
[30] Gary G. Borisy,et al. Individuality, Stability, and Variability of the Plaque Microbiome , 2016, Front. Microbiol..
[31] R. Reiter,et al. Functional roles of melatonin in plants, and perspectives in nutritional and agricultural science. , 2012, Journal of experimental botany.
[32] Duygu Kara,et al. Differences between single- and dual-species biofilms of Streptococcus mutans and Veillonella parvula in growth, acidogenicity and susceptibility to chlorhexidine. , 2006, European journal of oral sciences.
[33] Peter Cimermancic,et al. A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics , 2014, Cell.
[34] C. Boddy,et al. Natural products: Mapping an amazing thicket. , 2016, Nature chemical biology.
[35] J. A. Aas,et al. Defining the Normal Bacterial Flora of the Oral Cavity , 2005, Journal of Clinical Microbiology.
[36] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[37] B. Ogaard,et al. Intra-oral variations in total plaque fluoride related to plaque pH. A study in orthodontic patients. , 1997, Caries research.
[38] G. Shockman,et al. Amino acid requirements of Streptococcus mutans and other oral streptococci , 1975, Infection and immunity.
[39] Nigel W. Hardy,et al. A proposed framework for the description of plant metabolomics experiments and their results , 2004, Nature Biotechnology.
[40] G. Perry,et al. A Novel Endogenous Indole Protects Rodent Mitochondria and Extends Rotifer Lifespan , 2010, PloS one.
[41] Juan E. González,et al. Messing with Bacterial Quorum Sensing , 2006, Microbiology and Molecular Biology Reviews.
[42] Bonnie L. Bassler,et al. Bacterial Small-Molecule Signaling Pathways , 2006, Science.
[43] Shibu Yooseph,et al. Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism , 2015, The ISME Journal.
[44] John D. Venable,et al. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra , 2004, Nature Methods.
[45] Kristian Fog Nielsen,et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking , 2016, Nature Biotechnology.
[46] Katherine H. Huang,et al. A framework for human microbiome research , 2012, Nature.
[47] John Quackenbush,et al. Data standards for 'omic' science , 2004, Nature Biotechnology.
[48] J. Griffin,et al. Time-domain Bayesian detection and estimation of noisy damped sinusoidal signals applied to NMR spectroscopy. , 2007, Journal of magnetic resonance.
[49] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[50] J. Tagg,et al. Salivaricin A2 and the Novel Lantibiotic Salivaricin B Are Encoded at Adjacent Loci on a 190-Kilobase Transmissible Megaplasmid in the Oral Probiotic Strain Streptococcus salivarius K12 , 2006, Applied and Environmental Microbiology.
[51] Shibu Yooseph,et al. An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome , 2013, Microbiome.
[52] S. Yooseph,et al. Using DGGE profiling to develop a novel culture medium suitable for oral microbial communities. , 2010, Molecular oral microbiology.
[53] In-Jung Lee,et al. Sorokiniol: a new enzymes inhibitory metabolite from fungal endophyte Bipolaris sorokiniana LK12 , 2016, BMC Microbiology.
[54] Oliver Fiehn,et al. Quality control for plant metabolomics: reporting MSI-compliant studies. , 2008, The Plant journal : for cell and molecular biology.
[55] Elaine Holmes,et al. The Consortium for Metabonomic Toxicology (COMET): aims, activities and achievements. , 2005, Pharmacogenomics.
[56] Andrew H. Van Benschoten,et al. Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine. , 2014, Cell host & microbe.
[57] D. Wishart. Emerging applications of metabolomics in drug discovery and precision medicine , 2016, Nature Reviews Drug Discovery.
[58] Nigel W. Hardy,et al. Proposed minimum reporting standards for chemical analysis , 2007, Metabolomics.
[59] W. Abraham,et al. Antimicrobial and biofilm inhibiting diketopiperazines. , 2012, Current medicinal chemistry.
[60] Krystle L. Chavarria,et al. Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora , 2014, Proceedings of the National Academy of Sciences.
[61] S. Yooseph,et al. Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle , 2014, Proceedings of the National Academy of Sciences.
[62] A. M. Caraballo-Rodríguez,et al. Natural products as mediators of disease. , 2017, Natural product reports.
[63] Maxwell H. Anderson,et al. Interspecies Interactions within Oral Microbial Communities , 2007, Microbiology and Molecular Biology Reviews.
[64] C. Schachtele,et al. Effect of pH on the Growth and Proteolytic Activity of Porphyromonas gingivalis and Bacteroides intermedius , 1990, Journal of dental research.
[65] Forest Rohwer,et al. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. , 2015, International journal of mass spectrometry.