Protein classification by stochastic modeling and optimal filtering of amino-acid sequences.

[1]  Collin M. Stultz,et al.  Structural analysis based on state‐space modeling , 1993, Protein science : a publication of the Protein Society.

[2]  C. DeLisi,et al.  Constrained optimization and protein structure determination. , 1991, The American journal of physiology.

[3]  J. Tohá,et al.  Pattern recognition of the secondary structure of proteins (α-helix and β-structure) , 1990 .

[4]  Lawrence R. Rabiner,et al.  A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.

[5]  T. Sejnowski,et al.  Predicting the secondary structure of globular proteins using neural network models. , 1988, Journal of molecular biology.

[6]  J. Richardson,et al.  Amino acid preferences for specific locations at the ends of alpha helices. , 1988, Science.

[7]  Richard H. Lathrop,et al.  ARIADNE: pattern-directed inference and hierarchical abstraction in protein structure recognition , 1987, CACM.

[8]  P Argos,et al.  Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures. Strategies for protein folding and a guide for site-directed mutagenesis. , 1987, Journal of molecular biology.

[9]  C. DeLisi,et al.  Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins. , 1987, Journal of molecular biology.

[10]  W. Kabsch,et al.  Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.

[11]  Temple F. Smith,et al.  Comparison of biosequences , 1981 .

[12]  J. Garnier,et al.  Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. , 1978, Journal of molecular biology.

[13]  C. Anfinsen.  Principles that govern the folding of protein chains. , 1973, Science.

[14]  J. Greer.  Comparative modeling methods: Application to the family of the mammalian serine proteases , 1990, Proteins.

[15]  Bernard Henrissat,et al.  Structural homology among the peroxidase enzyme family revealed by hydrophobic cluster analysis , 1990, Proteins.

[16]  R. F. Smith,et al.  Automatic generation of primary sequence patterns from sets of related protein sequences. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Q L Zhu,et al.  Acid helix‐turn activator motif , 1990, Proteins.

[18]  G. Churchill.  Stochastic models for heterogeneous DNA sequences. , 1989, Bulletin of mathematical biology.

[19]  M. Karplus,et al.  Protein secondary structure prediction with a neural network. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Arnold T. Hagler,et al.  The Role of Energy Minimization in Simulation Strategies of Biomolecular Systems , 1989 .

[21]  M. Karplus,et al.  Crystallographic refinement by simulated annealing: application to crambin , 1989 .

[22]  G. Schulz,et al.  A critical evaluation of methods for prediction of protein secondary structures. , 1988, Annual review of biophysics and biophysical chemistry.

[23]  J. Richardson,et al.  The anatomy and taxonomy of protein structure. , 1981, Advances in protein chemistry.

[24]  P. Y. Chou,et al.  Empirical predictions of protein conformation. , 1978, Annual review of biochemistry.

[25]  Fred C. Schweppe,et al.  Evaluation of likelihood functions for Gaussian signals , 1965, IEEE Trans. Inf. Theory.