Quantitation of DNA and RNA with Absorption and Fluorescence Spectroscopy

Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques employing Hoechst 33258, ethidium bromide, and PicoGreen. The range of the assays covers 25 pg/ml to 50 µg/ml. Absorbance at 260 nm has an effective range from 1 to 50 µg/ml; Hoechst 33258 from 0.01 to 15 µg/ml; ethidium bromide from 0.1 to 10 µg/ml; and PicoGreen from 25 to 1000 pg/ml. © 2017 by John Wiley & Sons, Inc.

[1]  J. Le Pecq Use of ethidium bromide for separation and determination of nucleic acids of various conformational forms and measurement of their associated enzymes. , 1971, Methods of biochemical analysis.

[2]  C. G. Miyada,et al.  Oligonucleotide probes for the screening of recombinant DNA libraries. , 1987, Methods in enzymology.

[3]  M. V. Lancker,et al.  A Comparison of Four Frequently Used Assays for Quantitative Determination of DNA , 1986 .

[4]  Wallace Rb,et al.  Oligonucleotide probes for the screening of recombinant DNA libraries , 1987 .

[5]  P. Doty,et al.  Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. , 1962, Journal of molecular biology.

[6]  M. Waring,et al.  Assignment of DNA binding sites for 4',6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study. , 1988, Biochimica et biophysica acta.

[7]  C. Cocito,et al.  Spectrofluorometry of dyes with DNAs of different base composition and conformation. , 1989, Analytical biochemistry.

[8]  F. Becker,et al.  Fluorometric quantitation of single-stranded DNA: a method applicable to the technique of alkaline elution. , 1982, Analytical biochemistry.

[9]  K. Paigen,et al.  A simple, rapid, and sensitive DNA assay procedure. , 1980, Analytical biochemistry.

[10]  C. Bolognesi,et al.  Improved microfluorometric DNA determination in biological material using 33258 Hoechst. , 1979, Analytical biochemistry.

[11]  Philippe R. Desjardins,et al.  Microvolume quantitation of nucleic acids. , 2011, Current protocols in molecular biology.