BioMart Central Portal: an open database network for the biological community

BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.

Damian Smedley | Syed Haider | Jianxin Wang | Robin Haw | Matthew Hall | Richard A. Baldock | Reinhard Simon | Simon A. Forbes | Jon W. Teague | Takatomo Fujisawa | Shen Hu | Kevin R. Stone | Nelson Ndegwa | Christina K. Yung | Jun Wang | Michael Primig | William C. Skarnes | Toshiaki Katayama | Jiye Ai | Vivek Iyer | William Spooner | Philip Jones | Peter Stevenson | Rosalind J. Cutts | Emanuela Gadaleta | Claude Chelala | Simon J. Hubbard | Junjun Zhang | Long Yao | Joachim Baran | Anthony Cros | Jonathan M. Guberman | Jack Hsu | Arek Kasprzyk | Andrew Blake | Ken Youens-Clark | Olivier Arnaiz | Linda Sperling | François Moreews | David Croft | Alex Di Génova | David M. Goodstein | Gunes Gundem | Bernard Haggarty | Todd W. Harris | Rhoda Kinsella | Lei Kong | Daniel Lawson | Yong Liang | Núria López-Bigas | Jie Luo | Michael J. Lush | Jeremy C. Mason | Darren J. Oakley | Christian Perez-Llamas | Elena Rivkin | Steven Rosanoff | Rebecca Shepherd | Brett Whitty | David Tai Wai Wong | Marie Wong-Erasmus | J. Mason | D. Smedley | R. Haw | Jiye Ai | J. Teague | R. Baldock | N. López-Bigas | Christian Perez-Llamas | G. Gundem | M. Primig | S. Forbes | A. Kasprzyk | W. Spooner | Syed Haider | D. Lawson | S. Hubbard | M. Hall | V. Iyer | M. Lush | R. Kinsella | F. Moreews | Toshiaki Katayama | C. Yung | T. Harris | D. Goodstein | David Croft | N. Ndegwa | T. Fujisawa | W. Skarnes | C. Chelala | Shen Hu | Junjun Zhang | Jianxin Wang | A. Cros | Yong Liang | J. Guberman | J. Hsu | Lei Kong | B. Whitty | A. Génova | L. Sperling | A. Blake | Bernard Haggarty | O. Arnaiz | Jun Wang | Kevin R. Stone | R. Cutts | K. Youens-Clark | S. Rosanoff | J. Baran | Jie Luo | Philip Jones | E. Rivkin | D. Wong | D. Oakley | Rebecca Shepherd | Emanuela Gadaleta | R. Simon | Peter Stevenson | M. Wong-Erasmus | Long Yao | Brett Whitty | Andrew Blake | François Moreews | Marie Wong-Erasmus | Jianxin Wang | Takatomo Fujisawa | Jun Wang

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