Data Sanitization to Reduce Private Information Leakage from Functional Genomics
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Prashant S. Emani | Charlotte M. Brannon | M. Gerstein | J. Cherry | A. Harmanci | A. Miranker | Gamze Gürsoy | J. Strattan | O. Jolanki | P. Emani | Otto Jolanki
[1] Maximillian S Westphal,et al. SMaSH: Sample matching using SNPs in humans , 2019, BMC Genomics.
[2] Wenhui Wang,et al. A probabilistic multi-omics data matching method for detecting sample errors in integrative analysis , 2019, GigaScience.
[3] Michael J. Purcaro,et al. Revealing the brain's molecular architecture. , 2018, Science.
[4] Yaniv Erlich,et al. Identity inference of genomic data using long-range familial searches , 2018, Science.
[5] Michael D. Edge,et al. Statistical Detection of Relatives Typed with Disjoint Forensic and Biomedical Loci , 2018, Cell.
[6] Brian L Browning,et al. A One-Penny Imputed Genome from Next-Generation Reference Panels. , 2018, American journal of human genetics.
[7] Fabian J Theis,et al. SCANPY: large-scale single-cell gene expression data analysis , 2018, Genome Biology.
[8] Mauricio O. Carneiro,et al. Scaling accurate genetic variant discovery to tens of thousands of samples , 2017, bioRxiv.
[9] Peter J. Park,et al. NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types , 2017, Nucleic acids research.
[10] B. Knoppers,et al. Are Data Sharing and Privacy Protection Mutually Exclusive? , 2016, Cell.
[11] Fidel Ramírez,et al. deepTools2: a next generation web server for deep-sequencing data analysis , 2016, Nucleic Acids Res..
[12] Lior Pachter,et al. Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.
[13] M. Gerstein,et al. Quantification of private information leakage from phenotype-genotype data: linking attacks , 2016, Nature Methods.
[14] N. Loman,et al. A complete bacterial genome assembled de novo using only nanopore sequencing data , 2015, Nature Methods.
[15] David A. Knowles,et al. Transcriptome Sequencing of a Large Human Family Identifies the Impact of Rare Noncoding Variants , 2014, American journal of human genetics.
[16] Tao Huang,et al. MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis , 2014, PLoS Comput. Biol..
[17] Yaniv Erlich,et al. Routes for breaching and protecting genetic privacy , 2013, Nature Reviews Genetics.
[18] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[19] Joshua M. Stuart,et al. The Cancer Genome Atlas Pan-Cancer analysis project , 2013, Nature Genetics.
[20] Pedro G. Ferreira,et al. Transcriptome and genome sequencing uncovers functional variation in humans , 2013, Nature.
[21] Ellen T. Gelfand,et al. The Genotype-Tissue Expression (GTEx) project , 2013, Nature Genetics.
[22] Eran Halperin,et al. Identifying Personal Genomes by Surname Inference , 2013, Science.
[23] E. Schadt. The changing privacy landscape in the era of big data , 2012, Molecular systems biology.
[24] K. Hao,et al. Bayesian method to predict individual SNP genotypes from gene expression data , 2012, Nature Genetics.
[25] N. Cox,et al. On sharing quantitative trait GWAS results in an era of multiple-omics data and the limits of genomic privacy. , 2012, American journal of human genetics.
[26] Peter J. Bickel,et al. Measuring reproducibility of high-throughput experiments , 2011, 1110.4705.
[27] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[28] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[29] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[30] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[31] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[32] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[33] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[34] S. Nelson,et al. Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays , 2008, PLoS genetics.
[35] Vitaly Shmatikov,et al. Robust De-anonymization of Large Sparse Datasets , 2008, 2008 IEEE Symposium on Security and Privacy (sp 2008).
[36] T. Hampton,et al. The Cancer Genome Atlas , 2020, Indian Journal of Medical and Paediatric Oncology.
[37] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[38] Bo Peng,et al. Large-Scale Privacy-Preserving Mapping of Human Genomic Sequences on Hybrid Clouds , 2012, NDSS.
[39] A map of human genome variation from population scale sequencing , 2012 .
[40] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..
[41] L. Sweeney. Simple Demographics Often Identify People Uniquely , 2000 .