Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective.
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[1] C. Waddington. Canalization of Development and the Inheritance of Acquired Characters , 1942, Nature.
[2] C. Waddington. The strategy of the genes , 1957 .
[3] J. Monod,et al. Teleonomic mechanisms in cellular metabolism, growth, and differentiation. , 1961, Cold Spring Harbor symposia on quantitative biology.
[4] H. Curtis. Formal discussion of: somatic mutations and carcinogenesis. , 1965, Cancer research.
[5] S. Kauffman. Metabolic stability and epigenesis in randomly constructed genetic nets. , 1969, Journal of theoretical biology.
[6] S. Kauffman. Homeostasis and Differentiation in Random Genetic Control Networks , 1969, Nature.
[7] S. Kauffman. Differentiation of malignant to benign cells. , 1971, Journal of theoretical biology.
[8] G. B. Pierce,et al. Differentiation of malignant to benign cells. , 1971, Cancer research.
[9] John Cairns,et al. Mutation selection and the natural history of cancer , 1975, Nature.
[10] S. Gould,et al. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.
[11] Peter A. Jones,et al. Cellular differentiation, cytidine analogs and DNA methylation , 1980, Cell.
[12] I. Prigogine,et al. Exploring Complexity: An Introduction , 1989 .
[13] H. Rubin. On the nature of enduring modifications induced in cells and organisms. , 1990, The American journal of physiology.
[14] K. Kinzler,et al. The multistep nature of cancer. , 1993, Trends in genetics : TIG.
[15] W. Clark,et al. The nature of cancer: morphogenesis and progressive (self)-disorganization in neoplastic development and progression. , 1995, Acta oncologica.
[16] C. Der,et al. Loss of oncogenic ras expression does not correlate with loss of tumorigenicity in human cells. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[17] M. Bissell,et al. An odyssey from breast to bone: Multi‐step control of mammary metastases and osteolysis by matrix metalloproteinases , 1999, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.
[18] J. Mesirov,et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.
[19] Rethinking the origin of species by natural selection. , 1999, Rivista di biologia.
[20] D. Hanahan,et al. The Hallmarks of Cancer , 2000, Cell.
[21] L. Li,et al. Transdifferentiation in neoplastic development and its pathological implication. , 2001, Histology and histopathology.
[22] S. Dhanasekaran,et al. Delineation of prognostic biomarkers in prostate cancer , 2001, Nature.
[23] Elise C. Kohn,et al. The microenvironment of the tumour–host interface , 2001, Nature.
[24] Yudong D. He,et al. Gene expression profiling predicts clinical outcome of breast cancer , 2002, Nature.
[25] René Bernards,et al. A progression puzzle. , 2002, Nature.
[26] R. Strausberg,et al. The Cancer Genome Anatomy Project: Online Resources to Reveal the Molecular Signatures of Cancer , 2002, Cancer investigation.
[27] Charles A Powell,et al. Non-small-cell lung cancer molecular signatures recapitulate lung developmental pathways. , 2003, The American journal of pathology.
[28] J. Abbruzzese,et al. Developmental biology informs cancer: the emerging role of the hedgehog signaling pathway in upper gastrointestinal cancers. , 2003, Cancer cell.
[29] M. Meyerson,et al. Molecular classification and molecular genetics of human lung cancers. , 2004, Seminars in oncology.
[30] S. Batalov,et al. A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[31] T. Barrette,et al. ONCOMINE: a cancer microarray database and integrated data-mining platform. , 2004, Neoplasia.
[32] Massimo Marchiori,et al. Error and attacktolerance of complex network s , 2004 .
[33] R. Sandberg,et al. Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI). , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[34] Gabriel S. Eichler,et al. Cell fates as high-dimensional attractor states of a complex gene regulatory network. , 2005, Physical review letters.
[35] C. Boland,et al. Somatic evolution of cancer cells. , 2005, Seminars in cancer biology.
[36] A. Feinberg,et al. The epigenetic progenitor origin of human cancer , 2006, Nature Reviews Genetics.
[37] L. Coussens,et al. Tumor stroma and regulation of cancer development. , 2006, Annual review of pathology.
[38] Emmanuel Barillot,et al. ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis , 2005, Nucleic Acids Res..
[39] Donald E Ingber,et al. A non-genetic basis for cancer progression and metastasis: self-organizing attractors in cell regulatory networks. , 2006, Breast disease.
[40] A. Joe,et al. Mechanisms of Disease: oncogene addiction—a rationale for molecular targeting in cancer therapy , 2006, Nature Clinical Practice Oncology.
[41] Max S Wicha,et al. Cancer stem cells: an old idea--a paradigm shift. , 2006, Cancer research.
[42] G. Parmigiani,et al. The Consensus Coding Sequences of Human Breast and Colorectal Cancers , 2006, Science.
[43] Donald E. Ingber,et al. Towards a Holistic, Yet Gene-Centered Analysis of Gene Expression Profiles: A Case Study of Human Lung Cancers , 2006, Journal of biomedicine & biotechnology.
[44] Sui Huang,et al. Bifurcation dynamics in lineage-commitment in bipotent progenitor cells. , 2007, Developmental biology.
[45] S. Kauffman,et al. Robustness and evolvability in genetic regulatory networks. , 2007, Journal of theoretical biology.
[46] A. Sparks,et al. The Genomic Landscapes of Human Breast and Colorectal Cancers , 2007, Science.
[47] Mark Ptashne,et al. On the use of the word ‘epigenetic’ , 2007, Current Biology.
[48] E. Birney,et al. Patterns of somatic mutation in human cancer genomes , 2007, Nature.
[49] Leif E. Peterson,et al. Inducible FGFR-1 activation leads to irreversible prostate adenocarcinoma and an epithelial-to-mesenchymal transition. , 2007, Cancer cell.
[50] C. Bonifer,et al. How transcription factors program chromatin--lessons from studies of the regulation of myeloid-specific genes. , 2008, Seminars in immunology.
[51] A. Regev,et al. An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors , 2008, Nature Genetics.
[52] Kornelia Polyak,et al. Microenvironmental regulation of cancer development. , 2008, Current opinion in genetics & development.
[53] K. Dolinski,et al. Use and misuse of the gene ontology annotations , 2008, Nature Reviews Genetics.
[54] J. Dick,et al. Stem cell concepts renew cancer research. , 2008, Blood.
[55] Claude Desplan,et al. Stochasticity and Cell Fate , 2008, Science.
[56] A. Oudenaarden,et al. Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences , 2008, Cell.
[57] Cancer Stem Cells: An Old Idea--A Paradigm Shift , 2008 .
[58] Buzz Baum,et al. Transitions between epithelial and mesenchymal states in development and disease. , 2008, Seminars in cell & developmental biology.
[59] Hannah H. Chang,et al. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells , 2008, Nature.
[60] U. Rapp,et al. Oncogene-induced plasticity and cancer stem cells , 2008, Cell cycle.
[61] Simon Kasif,et al. Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers , 2008, Genome Biology.
[62] Amy E. Hawkins,et al. DNA sequencing of a cytogenetically normal acute myeloid leukemia genome , 2008, Nature.
[63] G. Parmigiani,et al. Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses , 2008, Science.
[64] Brian H. Dunford-Shore,et al. Somatic mutations affect key pathways in lung adenocarcinoma , 2008, Nature.
[65] Sui Huang. Reprogramming cell fates: reconciling rarity with robustness , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[66] R. Weinberg,et al. Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits , 2009, Nature Reviews Cancer.
[67] Sui Huang,et al. Complex Gene Regulatory Networks - from Structure to Biological Observables: Cell Fate Determination , 2009, Encyclopedia of Complexity and Systems Science.
[68] C. Peterson,et al. Stem cell states, fates, and the rules of attraction. , 2009, Cell stem cell.
[69] Hannah H. Chang,et al. Non-genetic heterogeneity — a mutation-independent driving force for the somatic evolution of tumours , 2009, Nature Reviews Genetics.
[70] C. Klein,et al. Parallel progression of primary tumours and metastases , 2009, Nature Reviews Cancer.
[71] Robert A. Meyers,et al. Encyclopedia of Complexity and Systems Science , 2009 .
[72] J. Uhm. An Integrated Genomic Analysis of Human Glioblastoma Multiforme , 2009 .
[73] Principles of Cancer Therapy: Oncogene and Non-oncogene Addiction , 2009, Cell.
[74] Sui Huang,et al. The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation. , 2010, Biophysical journal.
[75] Stuart A. Kauffman,et al. ORIGINS OF ORDER , 2019, Origins of Order.