Mapping U.S. cattle shipment networks: Spatial and temporal patterns of trade communities from 2009 to 2011.

The application of network analysis to cattle shipments broadens our understanding of shipment patterns beyond pairwise interactions to the network as a whole. Such a quantitative description of cattle shipments in the U.S. can identify trade communities, describe temporal shipment patterns, and inform the design of disease surveillance and control strategies. Here, we analyze a longitudinal dataset of beef and dairy cattle shipments from 2009 to 2011 in the United States to characterize communities within the broader cattle shipment network, which are groups of counties that ship mostly to each other. Because shipments occur over time, we aggregate the data at various temporal scales to examine the consistency of network and community structure over time. Our results identified nine large (>50 counties) communities based on shipments of beef cattle in 2009 aggregated into an annual network and nine large communities based on shipments of dairy cattle. The size and connectance of the shipment network was highly dynamic; monthly networks were smaller than yearly networks and revealed seasonal shipment patterns consistent across years. Comparison of the shipment network over time showed largely consistent shipping patterns, such that communities identified on annual networks of beef and diary shipments from 2009 still represented 41-95% of shipments in monthly networks from 2009 and 41-66% of shipments from networks in 2010 and 2011. The temporal aspects of cattle shipments suggest that future applications of the U.S. cattle shipment network should consider seasonal shipment patterns. However, the consistent within-community shipping patterns indicate that yearly communities could provide a reasonable way to group regions for management.

[1]  Daniel A. Grear,et al.  Local cattle movements in response to ongoing bovine tuberculosis zonation and regulations in Michigan, USA. , 2014, Preventive veterinary medicine.

[2]  Michael Greger,et al.  The long haul: risks associated with livestock transport. , 2007, Biosecurity and bioterrorism : biodefense strategy, practice, and science.

[3]  William Lane Austin,et al.  The Census of Agriculture , 1930 .

[4]  T. Bailey Spatial Analysis: A Guide for Ecologists , 2006 .

[5]  Jennifer A Hoeting,et al.  Identification of migratory bird flyways in North America using community detection on biological networks. , 2016, Ecological applications : a publication of the Ecological Society of America.

[6]  Jean-Loup Guillaume,et al.  Fast unfolding of communities in large networks , 2008, 0803.0476.

[7]  Gábor Csárdi,et al.  The igraph software package for complex network research , 2006 .

[8]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[9]  David J. Groggel,et al.  Practical Nonparametric Statistics , 2000, Technometrics.

[10]  Andrea Lancichinetti,et al.  Community detection algorithms: a comparative analysis: invited presentation, extended abstract , 2009, VALUETOOLS.

[11]  Benjamin H. Good,et al.  Performance of modularity maximization in practical contexts. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[12]  T. Halasa,et al.  Temporal characterisation of the network of Danish cattle movements and its implication for disease control: 2000-2009. , 2013, Preventive Veterinary Medicine.

[13]  Mark Newman,et al.  Networks: An Introduction , 2010 .

[14]  E. Padilha,et al.  Evaluation of Antimalarial Activity and Toxicity of a New Primaquine Prodrug , 2014, PloS one.

[15]  L. Danon,et al.  Demographic structure and pathogen dynamics on the network of livestock movements in Great Britain , 2006, Proceedings of the Royal Society B: Biological Sciences.

[16]  M. Amaku,et al.  Detecting livestock production zones. , 2013, Preventive veterinary medicine.

[17]  Edith S. Marshall,et al.  Results of a survey to estimate cattle movements and contact rates among beef herds in California, with reference to the potential spread and control of foot-and-mouth disease. , 2009, Journal of the American Veterinary Medical Association.

[18]  Elisabeta Vergu,et al.  Characteristics of the spatio-temporal network of cattle movements in France over a 5-year period. , 2014, Preventive veterinary medicine.

[19]  A. Giovannini,et al.  The concept of compartmentalisation. , 2006, Revue scientifique et technique.

[20]  Daniel A. Grear,et al.  A national-scale picture of U.S. cattle movements obtained from Interstate Certificate of Veterinary Inspection data. , 2013, Preventive veterinary medicine.

[21]  Ryan S Miller,et al.  Assessment of paper interstate certificates of veterinary inspection used to support disease tracing in cattle. , 2013, Journal of the American Veterinary Medical Association.

[22]  Matt J. Keeling,et al.  The Impact of Movements and Animal Density on Continental Scale Cattle Disease Outbreaks in the United States , 2014, PloS one.

[23]  Achim Zeileis,et al.  Structured Additive Regression Models: An R Interface to BayesX , 2015 .

[24]  Uno Wennergren,et al.  A Bayesian Approach for Modeling Cattle Movements in the United States: Scaling up a Partially Observed Network , 2013, PloS one.

[25]  T E Carpenter,et al.  Direct and indirect contact rates among beef, dairy, goat, sheep, and swine herds in three California counties, with reference to control of potential foot-and-mouth disease transmission. , 2001, American journal of veterinary research.

[26]  Roger Bivand,et al.  Comparing Implementations of Estimation Methods for Spatial Econometrics , 2015 .

[27]  C. Staubach,et al.  Epidemiology of classical swine fever in Germany in the 1990s. , 2000, Veterinary microbiology.

[28]  E. Fèvre,et al.  Animal movements and the spread of infectious diseases , 2006, Trends in Microbiology.

[29]  M. Konschake,et al.  Trade communities and their spatial patterns in the German pork production network. , 2011, Preventive veterinary medicine.

[30]  Rowland Raymond Kao,et al.  Tools to study trends in community structure: application to fish and livestock trading networks. , 2011, Preventive veterinary medicine.

[31]  M. Nöremark,et al.  Network analysis of cattle and pig movements in Sweden: measures relevant for disease control and risk based surveillance. , 2011, Preventive veterinary medicine.

[32]  Hong Liu,et al.  Epirur_Cattle: A Spatially Explicit Agent-based Simulator of Beef Cattle Movements , 2012, ICCS.

[33]  M. Craft Infectious disease transmission and contact networks in wildlife and livestock , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[34]  B. Dufour,et al.  Vulnerability of animal trade networks to the spread of infectious diseases: a methodological approach applied to evaluation and emergency control strategies in cattle, France, 2005. , 2011, Transboundary and emerging diseases.

[35]  C Dubé,et al.  Introduction to network analysis and its implications for animal disease modelling. , 2011, Revue scientifique et technique.

[36]  A. Hill,et al.  Direct and indirect contact rates among livestock operations in Colorado and Kansas. , 2014, Journal of the American Veterinary Medical Association.