RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
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Edmund K. Burke | Jacek Blazewicz | Marek Blazewicz | Marta Szachniuk | Szymon Wasik | Mariusz Popenda | Ryszard W. Adamiak | E. Burke | J. Blazewicz | R. Adamiak | M. Popenda | M. Szachniuk | Szymon Wasik | Marek Blazewicz | J. Błażewicz | Marta Szachniuk
[1] Steven E Brenner,et al. Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. , 2004, Nucleic acids research.
[2] Zukang Feng,et al. The Nucleic Acid Database. , 2002, Acta crystallographica. Section D, Biological crystallography.
[3] Xiang-Jun Lu,et al. Web 3DNA—a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures , 2009, Nucleic Acids Res..
[4] Kristian Rother,et al. MODOMICS: a database of RNA modification pathways, update 2008 , 2009, Nucleic Acids Res..
[5] Craig L. Zirbel,et al. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures , 2007, Journal of mathematical biology.
[6] Peter Clote,et al. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities , 2007, Nucleic Acids Res..
[7] Marek Blazewicz,et al. RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures , 2007, Nucleic Acids Res..
[8] Anna Marie Pyle,et al. RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. , 2003, Nucleic acids research.
[9] Thomas Steinke,et al. Columba: an integrated database of proteins, structures, and annotations , 2005, BMC Bioinformatics.
[10] John D. Westbrook,et al. Tools for the automatic identification and classification of RNA base pairs , 2003, Nucleic Acids Res..
[11] Anne Condon,et al. RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database , 2008, BMC Bioinformatics.
[12] Marcin Feder,et al. MODOMICS: a database of RNA modification pathways , 2005, Nucleic Acids Res..
[13] Dirk Walther,et al. Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling , 2009, Nucleic acids research.
[14] BMC Bioinformatics , 2005 .
[15] Lukasz Popenda,et al. Bulged adenosine influence on the RNA duplex conformation in solution. , 2008, Biochemistry.
[16] Helen M Berman,et al. RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). , 2008, RNA.
[17] Yanga Byun,et al. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots , 2009, Bioinform..
[18] Wilma K. Olson,et al. BPS: a database of RNA base-pair structures , 2008, Nucleic Acids Res..
[19] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[20] Eckart Bindewald,et al. RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign , 2007, Nucleic Acids Res..
[21] Chih-Wei Wang,et al. FASTR3D: a fast and accurate search tool for similar RNA 3D structures , 2009, Nucleic Acids Res..
[22] H. Al‐Hashimi,et al. Topology Links RNA Secondary Structure with Global Conformation, Dynamics, and Adaptation , 2010, Science.
[23] Ruth Nussinov,et al. The ARTS web server for aligning RNA tertiary structures , 2006, Nucleic Acids Res..
[24] W. Olson,et al. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. , 2003, Nucleic acids research.