In silico identification and validation of microRNAs from the genome of Solanum lycopersicum targeting Groundnut bud necrosis orthotospovirus

[1]  Raghuvir Singh,et al.  Heightened miR6024-NLR interactions facilitate necrotrophic pathogenesis in tomato , 2022, Plant Molecular Biology.

[2]  A. Kloczkowski,et al.  Prediction of Site Directed miRNAs as Key Players of Transcriptional Regulators Against Influenza C Virus Infection Through Computational Approaches , 2022, Frontiers in Molecular Biosciences.

[3]  S. Chakraborty,et al.  The Sw5a gene confers resistance to ToLCNDV and triggers an HR response after direct AC4 effector recognition , 2021, Proceedings of the National Academy of Sciences.

[4]  H. Ziebell,et al.  Novel targets for engineering Physostegia chlorotic mottle and tomato brown rugose fruit virus-resistant tomatoes: in silico prediction of tomato microRNA targets , 2020, PeerJ.

[5]  K. V. Ravishankar,et al.  Evaluation of tomato genotypes for resistance to bud necrosis disease caused by groundnut bud necrosis virus (GBNV) , 2020 .

[6]  K. Gruden,et al.  Potato Virus Y Infection Alters Small RNA Metabolism and Immune Response in Tomato , 2019, Viruses.

[7]  D. Does,et al.  Genetic modification to improve disease resistance in crops , 2019, The New phytologist.

[8]  Muhammad Aleem Ashraf,et al.  A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.) , 2019, PeerJ.

[9]  Neeti Sanan‐Mishra,et al.  Differential expression profiles of tomato miRNAs induced by Tobacco Mosaic Virus. , 2019 .

[10]  G. Galili,et al.  Tuning the Orchestra: miRNAs in Plant Immunity. , 2019, Trends in plant science.

[11]  G. Karthikeyan,et al.  Prevalence of Bud Blight of Tomato Caused by Groundnut bud necrosis virus in Tamil Nadu , 2018, International Journal of Current Microbiology and Applied Sciences.

[12]  M. Ventura,et al.  A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato , 2018, Front. Plant Sci..

[13]  Naidu A. Rayapati,et al.  First Report of Peanut Bud Necrosis Virus Infecting Bitter Gourd (Momordica charantia L.) in India , 2017 .

[14]  Yunbo Luo,et al.  Integrative analysis of circRNAs acting as ceRNAs involved in ethylene pathway in tomato. , 2017, Physiologia plantarum.

[15]  D. Jeong.  Functional diversity of microRNA variants in plants , 2016, Journal of Plant Biology.

[16]  N. Dey,et al.  Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum. , 2015, Virus research.

[17]  Qiulei Lang,et al.  Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing , 2014, Planta.

[18]  Jeffrey A. Thompson,et al.  Common features of microRNA target prediction tools , 2014, Front. Genet..

[19]  Isidore Rigoutsos,et al.  Interactive exploration of RNA22 microRNA target predictions , 2012, Bioinform..

[20]  N. Chua,et al.  Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus. , 2012, Molecular plant pathology.

[21]  R. Jain,et al.  Emerging Problems of Tospoviruses (Bunyaviridae) and their Management in the Indian Subcontinent. , 2012, Plant disease.

[22]  P. Stadler,et al.  ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology : AMB.

[23]  Patrick Xuechun Zhao,et al.  psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..

[24]  Yufei Huang,et al.  Survey of Computational Algorithms for MicroRNA Target Prediction , 2009, Current genomics.

[25]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[26]  N. Chua,et al.  Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance , 2006, Nature Biotechnology.

[27]  Jan Krüger,et al.  RNAhybrid: microRNA target prediction easy, fast and flexible , 2006, Nucleic Acids Res..

[28]  Anton J. Enright,et al.  Human MicroRNA Targets , 2004, PLoS biology.

[29]  R. Jain,et al.  Nucleocapsid protein gene sequence studies suggest that soybean bud blight is caused by a strain of groundnut bud necrosis virus , 2002 .

[30]  S. Mukherjee,et al.  In silico analysis reveals that several tomato microRNA/microRNA* sequences exhibit propensity to bind to tomato leaf curl virus (ToLCV) associated genomes and most of their encoded open reading frames (ORFs). , 2011, Plant physiology and biochemistry : PPB.

[31]  P. Jain.  Molecular diagnosis of Groundnut bud necrosis virus causing bud blight of tomato , 2006 .

[32]  S. Mukherjee,et al.  Genetic engineering for virus resistance , 2003 .