Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis.

Using two‐dimensional gel electrophoresis and N‐terminal amino acid sequencing analysis, we demonstrate that a mutant of the global regulatory protein ArcA fails to decrease the synthesis of the TCA cycle enzymes malate dehydrogenase, isocitrate dehydrogenase, lipoamide dehydrogenase E3 and succinate dehydrogenase in response to stasis, while the increased production of the glycolysis enzymes phosphoglycerate mutase and pyruvate kinase is unaffected. Microcalorimetric and respiratory measurements show that the continued production of TCA cycle enzymes in the (delta)arcA mutant is manifested as an elevated rate of respiration and total metabolic activity during starvation. The (delta)arcA mutant is severely impaired in surviving prolonged periods of exogenous carbon starvation, a phenotype that can be alleviated by overproducing the superoxide dismutase SodA. In addition, flow cytometry demonstrates that starving (delta)arcA mutant cells, in contrast to wild‐type cells, fail to perform reductive division, remain large and contain multiple chromosomal copies. We suggest that the ArcA‐dependent reduced production of electron donors and the decreased level and activity of the aerobic respiratory apparatus during growth arrest is an integral part of a defense system aimed at avoiding the damaging effects of oxygen radicals and controlling the rate of utilization of endogenous reserves.

[1]  G Sawers,et al.  Specific transcriptional requirements for positive regulation of the anaerobically inducible pfl operon by ArcA and FNR , 1993, Molecular microbiology.

[2]  A. Matin,et al.  Starvation-induced cross protection against heat or H2O2 challenge in Escherichia coli , 1988, Journal of bacteriology.

[3]  J. Foster,et al.  Starvation-Stress Response (SSR) of Salmonella typhimurium , 1993 .

[4]  L. Gustafsson,et al.  Thermodynamic considerations in constructing energy balances for cellular growth , 1993 .

[5]  A. Matin,et al.  The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli , 1991, Journal of bacteriology.

[6]  L. Gustafsson,et al.  Energy flux and osmoregulation of Saccharomyces cerevisiae grown in chemostats under NaCl stress , 1993, Journal of bacteriology.

[7]  T. Nyström,et al.  Cloning, mapping and nucleotide sequencing of a gene encoding a universal stress protein in Eschericha coli , 1992, Molecular microbiology.

[8]  M. Ortner,et al.  A respirometer for investigating oxidative cell metabolism: toward optimization of respiratory studies. , 1994, Analytical biochemistry.

[9]  T Nyström,et al.  Glucose starvation stimulon of Escherichia coli: role of integration host factor in starvation survival and growth phase-dependent protein synthesis , 1995, Journal of bacteriology.

[10]  T. Nyström,et al.  Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest , 1994, Molecular microbiology.

[11]  I. von Ossowski,et al.  Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII , 1991, Journal of bacteriology.

[12]  P. Kahn From Genome to Proteome: Looking at a Cell's Proteins , 1995 .

[13]  J. Knappe,et al.  A novel reaction of S-adenosyl-L-methionine correlated with the activation of pyruvate formate-lyase. , 1976, Biochemical and biophysical research communications.

[14]  G. Sawers,et al.  Anaerobic induction of pyruvate formate-lyase gene expression is mediated by the ArcA and FNR proteins , 1992, Journal of bacteriology.

[15]  F. Neidhardt,et al.  Ribosomes as sensors of heat and cold shock in Escherichia coli. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. S. Sohal,et al.  Relationship between Antioxidants, Prooxidants, and the Aging Process a , 1992, Annals of the New York Academy of Sciences.

[17]  B. Wanner,et al.  Involvement of phosphotransacetylase, acetate kinase, and acetyl phosphate synthesis in control of the phosphate regulon in Escherichia coli , 1992, Journal of bacteriology.

[18]  F. Neidhardt,et al.  Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates , 1978, Cell.

[19]  D. Touati,et al.  Isolation of superoxide dismutase mutants in Escherichia coli: is superoxide dismutase necessary for aerobic life? , 1986, The EMBO journal.

[20]  A. Matin,et al.  Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival , 1986, Journal of bacteriology.

[21]  R. Kolter,et al.  surA, an Escherichia coli gene essential for survival in stationary phase , 1990, Journal of bacteriology.

[22]  T. Nyström,et al.  Responses to multiple-nutrient starvation in marine Vibrio sp. strain CCUG 15956 , 1990, Journal of bacteriology.

[23]  A. Matin,et al.  Role of protein synthesis in the survival of carbon-starved Escherichia coli K-12 , 1984, Journal of bacteriology.

[24]  F. Neidhardt,et al.  Proteins induced by anaerobiosis in Escherichia coli , 1983, Journal of bacteriology.

[25]  T. Nyström,et al.  Survival, stress resistance, and alterations in protein expression in the marine vibrio sp. strain S14 during starvation for different individual nutrients , 1992, Applied and environmental microbiology.

[26]  F. Neidhardt,et al.  Culture Medium for Enterobacteria , 1974, Journal of bacteriology.

[27]  T. Nyström The trials and tribulations of growth arrest. , 1995, Trends in microbiology.

[28]  C. Cubitt,et al.  Starvation‐inducible loci of Salmonella typhimurium: regulation and roles in starvation‐survival , 1992, Molecular microbiology.

[29]  J. Iversen The pH mediated effects of initial glucose concentration on the transitory occurrence of extracellular metabolites, gas exchange and growth yields of aerobic batch cultures of Klebsiella pneumoniae , 1987, Biotechnology and bioengineering.

[30]  F. Neidhardt,et al.  The gene‐protein database of Escherichia coli: Edition 4 , 1991, Electrophoresis.

[31]  M. Saier,et al.  The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli , 1995, Molecular microbiology.

[32]  E. Lin,et al.  Adaptation of Escherichia coli to redox environments by gene expression , 1993, Molecular microbiology.

[33]  T. Nyström,et al.  Role of Protein Synthesis in the Cell Division and Starvation Induced Resistance to Autolysis of a Marine Vibrio during the Initial Phase of Starvation , 1989 .

[34]  P. O’Farrell High resolution two-dimensional electrophoresis of proteins. , 1975, The Journal of biological chemistry.

[35]  T. Nyström Global Systems Approach to the Physiology of the Starved Cell , 1993 .

[36]  T. Nyström The glucose‐starvation stimulon of Escherichia coli: induced and repressed synthesis of enzymes of central metabolic pathways and role of acetyl phosphate in gene expression and starvation survival , 1994, Molecular microbiology.

[37]  B. D. Davis,et al.  Role of ribosome degradation in the death of starved Escherichia coli cells , 1986, Journal of bacteriology.

[38]  E. Lin,et al.  arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[39]  H. Warner,et al.  Superoxide dismutase, aging, and degenerative disease. , 1994, Free radical biology & medicine.

[40]  A. Ninfa,et al.  Role of phosphorylated metabolic intermediates in the regulation of glutamine synthetase synthesis in Escherichia coli , 1992, Journal of bacteriology.

[41]  S. Iuchi,et al.  Adaptation of Escherichia coli to respiratory conditions: Regulation of gene expression , 1991, Cell.

[42]  F. Neidhardt,et al.  Gene‐Protein database of Escherichia coli K ‐ 12: Edition 3 , 1990, Electrophoresis.

[43]  S. Iuchi,et al.  Phosphorylation/dephosphorylation of the receiver module at the conserved aspartate residue controls transphosphorylation activity of histidine kinase in sensor protein ArcB of Escherichia coli. , 1993, The Journal of biological chemistry.

[44]  I. Fridovich,et al.  A superoxide dismutase mimic protects sodA sodB Escherichia coli against aerobic heating and stationary-phase death. , 1995, Archives of biochemistry and biophysics.

[45]  C. Li,et al.  A protein methyltransferase specific for altered aspartyl residues is important in Escherichia coli stationary-phase survival and heat-shock resistance. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[46]  T. Åkerlund,et al.  Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli , 1995, Journal of bacteriology.

[47]  T. Nystöm Role of guanosine tetraphosphate in gene expression and the survival of glucose or seryl-tRNA starved cells of Escherichia coli K12. , 1994, Molecular & general genetics : MGG.

[48]  D. Touati,et al.  Iron and oxygen regulation of Escherichia coli MnSOD expression: competition between the global regulators Fur and ArcA for binding to DNA , 1993, Molecular microbiology.

[49]  F. Neidhardt,et al.  Proteins induced by aerobiosis in Escherichia coli , 1983, Journal of bacteriology.

[50]  G. Sawers,et al.  Purification of ArcA and analysis of is specific interaction with the pfl promoter‐regulatory region , 1995, Molecular microbiology.