Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
暂无分享,去创建一个
[1] Anushya Muruganujan,et al. PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools , 2013, Nucleic Acids Res..
[2] Rotem Sorek,et al. Differential translation tunes uneven production of operon-encoded proteins. , 2013, Cell reports.
[3] T. Hwa,et al. Coordination of bacterial proteome with metabolism by cyclic AMP signalling , 2013, Nature.
[4] A. Varshavsky,et al. Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway. , 2013, Molecular cell.
[5] T. Silhavy,et al. Conformation-specific labeling of BamA and suppressor analysis suggest a cyclic mechanism for β-barrel assembly in Escherichia coli , 2013, Proceedings of the National Academy of Sciences.
[6] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.
[7] A. Amon,et al. Aneuploidy causes proteotoxic stress in yeast. , 2012, Genes & development.
[8] Marco Y. Hein,et al. Decoding Human Cytomegalovirus , 2012, Science.
[9] Adam Frost,et al. A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress , 2012, Cell.
[10] Peter D. Karp,et al. EcoCyc: fusing model organism databases with systems biology , 2012, Nucleic Acids Res..
[11] K. Gerdes,et al. Bacterial persistence and toxin-antitoxin loci. , 2012, Annual review of microbiology.
[12] K. Valgepea,et al. Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. , 2012, Journal of proteomics.
[13] Anna M. McGeachy,et al. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments , 2012, Nature Protocols.
[14] M. Stead,et al. RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria , 2012, Nucleic acids research.
[15] Johan Elf,et al. The lac Repressor Displays Facilitated Diffusion in Living Cells , 2012, Science.
[16] U. Sauer,et al. Multidimensional Optimality of Microbial Metabolism , 2012, Science.
[17] Gene-Wei Li,et al. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria , 2012, Nature.
[18] J. Weissman,et al. Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo , 2011, Cell.
[19] Nicholas T. Ingolia,et al. High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling , 2011, Science.
[20] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[21] M. Inouye,et al. Toxin-antitoxin systems in bacteria and archaea. , 2011, Annual review of genetics.
[22] Gene-Wei Li,et al. Central dogma at the single-molecule level in living cells , 2011, Nature.
[23] Yuval Hart,et al. Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli. , 2011, Molecular cell.
[24] T. Hwa,et al. Interdependence of Cell Growth and Gene Expression: Origins and Consequences , 2010, Science.
[25] Bernd Bukau,et al. Cellular strategies for controlling protein aggregation , 2010, Nature Reviews Molecular Cell Biology.
[26] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[27] J. Weissman,et al. A general lack of compensation for gene dosage in yeast , 2010, Molecular systems biology.
[28] B. Kallipolitis,et al. Translational Regulation of Gene Expression by an Anaerobically Induced Small Non-coding RNA in Escherichia coli* , 2010, The Journal of Biological Chemistry.
[29] Christopher A. Voigt,et al. Automated Design of Synthetic Ribosome Binding Sites to Precisely Control Protein Expression , 2009, Nature Biotechnology.
[30] Lukas N. Mueller,et al. Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics , 2009, Cell.
[31] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[32] Johan Elf,et al. Effects of macromolecular crowding and DNA looping on gene regulation kinetics , 2009 .
[33] M. Elowitz,et al. Frequency-modulated nuclear localization bursts coordinate gene regulation , 2008, Nature.
[34] N. Rajewsky,et al. Widespread changes in protein synthesis induced by microRNAs , 2008, Nature.
[35] Angelika Amon,et al. Aneuploidy: Cells Losing Their Balance , 2008, Genetics.
[36] D. Frishman,et al. Protein abundance profiling of the Escherichia coli cytosol , 2008, BMC Genomics.
[37] M. Mann,et al. Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. , 2008, Journal of proteome research.
[38] N. Barkai,et al. Variability and robustness in biomolecular systems. , 2007, Molecular cell.
[39] Uri Alon,et al. Input–output robustness in simple bacterial signaling systems , 2007, Proceedings of the National Academy of Sciences.
[40] Adam M. Feist,et al. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information , 2007, Molecular systems biology.
[41] S. Chevalier,et al. Lipid composition of membranes of Escherichia coli by liquid chromatography/tandem mass spectrometry using negative electrospray ionization. , 2007, Rapid communications in mass spectrometry : RCM.
[42] J. Elf,et al. Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell , 2007, Science.
[43] P. V. Hippel. From "Simple" DNA-Protein Interactions to the Macromolecular Machines of Gene Expression , 2007 .
[44] Uri Alon,et al. Rules for biological regulation based on error minimization. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[45] U. Alon,et al. Optimality and evolutionary tuning of the expression level of a protein , 2005, Nature.
[46] Peter S Swain,et al. Efficient attenuation of stochasticity in gene expression through post-transcriptional control. , 2004, Journal of molecular biology.
[47] B. Palsson,et al. Genome-scale models of microbial cells: evaluating the consequences of constraints , 2004, Nature Reviews Microbiology.
[48] C. Pál,et al. Dosage sensitivity and the evolution of gene families in yeast , 2003, Nature.
[49] O. Geiger,et al. Biosynthesis of phosphatidylcholine in bacteria. , 2003, Progress in lipid research.
[50] M. Goulian,et al. Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[51] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[52] G. Odell,et al. The segment polarity network is a robust developmental module , 2000, Nature.
[53] Sarah E. Ades,et al. The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor. , 1999, Genes & development.
[54] U. Alon,et al. Robustness in bacterial chemotaxis , 2022 .
[55] Koreaki Ito,et al. FtsH (HflB) Is an ATP-dependent Protease Selectively Acting on SecY and Some Other Membrane Proteins* , 1996, The Journal of Biological Chemistry.
[56] D. Fell. Understanding the Control of Metabolism , 1996 .
[57] F. Buttgereit,et al. A hierarchy of ATP-consuming processes in mammalian cells. , 1995, The Biochemical journal.
[58] J. Russell,et al. Energetics of bacterial growth: balance of anabolic and catabolic reactions. , 1995, Microbiological reviews.
[59] C. Kurland,et al. Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction , 1995, Journal of bacteriology.
[60] B. Rautenstrauss,et al. Differential proteolytic sensitivity of yeast fatty acid synthetase subunits alpha and beta contributing to a balanced ratio of both fatty acid synthetase components. , 1992, European journal of biochemistry.
[61] C. Kurland,et al. Codon preferences in free-living microorganisms. , 1990, Microbiological reviews.
[62] C. Petersen. Escherichia coli ribosomal protein L10 is rapidly degraded when synthesized in excess of ribosomal protein L7/L12 , 1990, Journal of bacteriology.
[63] H. Lodish,et al. Unequal synthesis and differential degradation of alpha and beta spectrin during murine erythroid differentiation , 1988, The Journal of cell biology.
[64] A. Grossman,et al. Sigma 32 synthesis can regulate the synthesis of heat shock proteins in Escherichia coli. , 1987, Genes & development.
[65] A. Datko,et al. Quantitative analysis of pathways of methionine metabolism and their regulation in lemna. , 1985, Plant physiology.
[66] M. Nomura,et al. Localization of the target site for translational regulation of the L11 operon and direct evidence for translational coupling in Escherichia coli , 1983, Cell.
[67] R. Moon,et al. Synthesis and assembly of spectrin during avian erythropoiesis: Stoichiometric assembly but unequal synthesis of α and β spectrin , 1983, Cell.
[68] D. Klionsky,et al. Differential polypeptide synthesis of the proton-translocating ATPase of Escherichia coli , 1982, Journal of bacteriology.
[69] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions. , 1981, Biochemistry.
[70] G. Williams,et al. The relative rates of protein synthesis and degradation in a growing culture of Escherichia coli. , 1980, The Journal of biological chemistry.
[71] F. Hirata,et al. Enzymatic synthesis and rapid translocation of phosphatidylcholine by two methyltransferases in erythrocyte membranes. , 1978, Proceedings of the National Academy of Sciences of the United States of America.
[72] F. Neidhardt,et al. Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts , 1978, Cell.
[73] M A Savageau,et al. Design of molecular control mechanisms and the demand for gene expression. , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[74] P. Dennis,et al. In vivo stability, maturation and relative differential synthesis rates of individual ribosomal proteins in Escherichia coli B/r. , 1974, Journal of molecular biology.
[75] F. Neidhardt,et al. Culture Medium for Enterobacteria , 1974, Journal of bacteriology.
[76] J. Maizel,et al. Synthesis of Excess Light Chains of Gamma Globulin by Rabbit Lymph Node Cells , 1966, Nature.
[77] J. Tukey. The Future of Data Analysis , 1962 .
[78] M. Selbach,et al. Global analysis of cellular protein translation by pulsed SILAC , 2009, Proteomics.
[79] E. Marcotte,et al. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation , 2007, Nature Biotechnology.
[80] Antje Chang,et al. BRENDA, enzyme data and metabolic information , 2002, Nucleic Acids Res..
[81] H. Bremer. Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate , 1999 .
[82] C. Gualerzi,et al. Translational control of prokaryotic gene expression. , 1990, Trends in genetics : TIG.
[83] R. Gourse,et al. Regulation of the synthesis of ribosomes and ribosomal components. , 1984, Annual review of biochemistry.
[84] R. Moon,et al. Synthesis and assembly of spectrin during avian erythropoiesis: stoichiometric assembly but unequal synthesis of alpha and beta spectrin. , 1983, Cell.