Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries
暂无分享,去创建一个
Bjoern Peters | J. Sidney | A. Sette | C. Moore | Sandy Ngo | C. Pinilla | E. Assarsson | Carrie Moore
[1] Nebojsa Jojic,et al. Extensive HLA class I allele promiscuity among viral CTL epitopes , 2007, European journal of immunology.
[2] Clemencia Pinilla,et al. Characterization of the peptide-binding specificity of the chimpanzee class I alleles A*0301 and A*0401 using a combinatorial peptide library , 2007, Immunogenetics.
[3] Bjoern Peters,et al. Integrating epitope data into the emerging web of biomedical knowledge resources , 2007, Nature Reviews Immunology.
[4] Tomer Hertz,et al. Identifying HLA supertypes by learning distance functions , 2007, Bioinform..
[5] Tin Wee Tan,et al. In silico grouping of peptide/HLA class I complexes using structural interaction characteristics , 2007, Bioinform..
[6] Philip E. Bourne,et al. The Immune Epitope Database and Analysis Resource , 2006, PRIB.
[7] Morten Nielsen,et al. A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules , 2006, PLoS Comput. Biol..
[8] Tomer Hertz,et al. PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions , 2006, BMC Bioinformatics.
[9] Bjoern Peters,et al. HLA-A*0201, HLA-A*1101, and HLA-B*0702 transgenic mice recognize numerous poxvirus determinants from a wide variety of viral gene products. , 2005, The Journal of Immunology.
[10] Bjoern Peters,et al. The High Frequency Indian Rhesus Macaque MHC Class I Molecule, Mamu-B*01, Does Not Appear to Be Involved in CD8+ T Lymphocyte Responses to SIVmac2391 , 2005, The Journal of Immunology.
[11] A Sette,et al. A computational resource for the prediction of peptide binding to Indian rhesus macaque MHC class I molecules. , 2005, Vaccine.
[12] Bjoern Peters,et al. HLA-A*0201, HLA-A*1101, and HLA-B*0702 Transgenic Mice Recognize Numerous Poxvirus Determinants from a Wide Variety of Viral Gene Products1 , 2005, The Journal of Immunology.
[13] Bjoern Peters,et al. HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[14] John Sidney,et al. Classification of A1- and A24-supertype molecules by analysis of their MHC-peptide binding repertoires , 2005, Immunogenetics.
[15] Vladimir Brusic,et al. MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides , 2005, Nucleic Acids Res..
[16] Vladimir Brusic,et al. PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse , 2005, Nucleic Acids Res..
[17] Alessandro Sette,et al. Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method , 2005, BMC Bioinformatics.
[18] Bjoern Peters,et al. Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications , 2005, Immunogenetics.
[19] P. Kloetzel,et al. Modeling the MHC class I pathway by combining predictions of proteasomal cleavage,TAP transport and MHC class I binding , 2005, Cellular and Molecular Life Sciences CMLS.
[20] Steve Wilson,et al. The Immune Epitope Database and Analysis Resource: From Vision to Blueprint , 2005, PLoS biology.
[21] J. Sidney,et al. Characterization of the peptide-binding specificity of Mamu-A*11 results in the identification of SIV-derived epitopes and interspecies cross-reactivity , 2005, Immunogenetics.
[22] J. Sidney,et al. Identification of Seventeen New Simian Immunodeficiency Virus-Derived CD8+ T Cell Epitopes Restricted by the High Frequency Molecule, Mamu-A*02, and Potential Escape from CTL Recognition1 , 2004, The Journal of Immunology.
[23] Ellis L. Reinherz,et al. Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles , 2004, Immunogenetics.
[24] Søren Brunak,et al. Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach , 2004, Bioinform..
[25] D. Flower,et al. Identifiying Human MHC Supertypes Using Bioinformatic Methods , 2004, The Journal of Immunology.
[26] O. Lund,et al. Definition of supertypes for HLA molecules using clustering of specificity matrices , 2004, Immunogenetics.
[27] Clemencia Pinilla,et al. A powerful combination: the use of positional scanning libraries and biometrical analysis to identify cross-reactive T cell epitopes. , 2004, Molecular immunology.
[28] John Sidney,et al. Simultaneous Prediction of Binding Capacity for Multiple Molecules of the HLA B44 Supertype 1 , 2003, The Journal of Immunology.
[29] S Brunak,et al. Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. , 2003, Tissue antigens.
[30] John Sidney,et al. Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules , 2003, Bioinform..
[31] O. Lund,et al. novel sequence representations Reliable prediction of T-cell epitopes using neural networks with , 2003 .
[32] John Sidney,et al. Class I molecules with similar peptide-binding specificities are the result of both common ancestry and convergent evolution , 2003, Immunogenetics.
[33] M. Sathiamurthy,et al. Population of the HLA ligand database. , 2003, Tissue antigens.
[34] Pingping Guan,et al. MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. , 2003, Applied bioinformatics.
[35] P. Kloetzel,et al. MAPPP: MHC class I antigenic peptide processing prediction. , 2003, Applied bioinformatics.
[36] John Sidney,et al. The HLA Molecules DQA1*0501/B1*0201 and DQA1*0301/B1*0302 Share an Extensive Overlap in Peptide Binding Specificity1 , 2002, The Journal of Immunology.
[37] Arne Elofsson,et al. Prediction of MHC class I binding peptides, using SVMHC , 2002, BMC Bioinformatics.
[38] J. Sidney,et al. Characterization of the Peptide-Binding Specificity of Mamu-B*17 and Identification of Mamu-B*17-Restricted Epitopes Derived from Simian Immunodeficiency Virus Proteins1 , 2002, The Journal of Immunology.
[39] Sylvia Janetzki,et al. A panel of MHC class I restricted viral peptides for use as a quality control for vaccine trial ELISPOT assays. , 2002, Journal of immunological methods.
[40] A Sette,et al. Majority of peptides binding HLA-A*0201 with high affinity crossreact with other A2-supertype molecules. , 2001, Human immunology.
[41] John Sidney,et al. Structural Features of Peptide Analogs of Human Histocompatibility Leukocyte Antigen Class I Epitopes That Are More Potent and Immunogenic than Wild-Type Peptide , 2001, The Journal of experimental medicine.
[42] R Simon,et al. Combinatorial Peptide Libraries and Biometric Score Matrices Permit the Quantitative Analysis of Specific and Degenerate Interactions Between Clonotypic TCR and MHC Peptide Ligands1 , 2001, The Journal of Immunology.
[43] S Brunak,et al. Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations. , 2001, Tissue antigens.
[44] M. Bogyo,et al. Global analysis of proteasomal substrate specificity using positional-scanning libraries of covalent inhibitors , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[45] John Sidney,et al. Measurement of MHC/Peptide Interactions by Gel Filtration , 1999, Current protocols in immunology.
[46] John Sidney,et al. Definition of the Mamu A*01 Peptide Binding Specificity: Application to the Identification of Wild-Type and Optimized Ligands from Simian Immunodeficiency Virus Regulatory Proteins1 , 2000, The Journal of Immunology.
[47] Taku Suto,et al. An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries , 2000, Immunogenetics.
[48] S Brunak,et al. Identifying cytotoxic T cell epitopes from genomic and proteomic information: "The human MHC project.". , 2000, Reviews in immunogenetics.
[49] O. Schueler‐Furman,et al. Structure‐based prediction of binding peptides to MHC class I molecules: Application to a broad range of MHC alleles , 2000, Protein science : a publication of the Protein Society.
[50] J. Sidney,et al. Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism , 1999, Immunogenetics.
[51] H. Rammensee,et al. SYFPEITHI: database for MHC ligands and peptide motifs , 1999, Immunogenetics.
[52] S Buus,et al. Description and prediction of peptide-MHC binding: the 'human MHC project'. , 1999, Current opinion in immunology.
[53] R A Houghten,et al. Exploring immunological specificity using synthetic peptide combinatorial libraries. , 1999, Current opinion in immunology.
[54] P. Cresswell,et al. Antigen recognition. , 1999, Current opinion in immunology.
[55] Todd M. Allen,et al. Characterization of the peptide binding motif of a rhesus MHC class I molecule (Mamu-A*01) that binds an immunodominant CTL epitope from simian immunodeficiency virus. , 1998, Journal of immunology.
[56] J. Sidney,et al. The HLA-A0207 Peptide Binding Repertoire is Limited to a Subset of the A0201 Repertoire , 1997 .
[57] S Uebel,et al. Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[58] J. Sidney,et al. Uncovering subdominant cytotoxic T-lymphocyte responses in lymphocytic choriomeningitis virus-infected BALB/c mice , 1997, Journal of virology.
[59] A Sette,et al. Two complementary methods for predicting peptides binding major histocompatibility complex molecules. , 1997, Journal of molecular biology.
[60] J. Sidney,et al. The HLA-A*0207 peptide binding repertoire is limited to a subset of the A*0201 repertoire. , 1997, Human immunology.
[61] J. Sidney,et al. Analysis of cytotoxic T cell responses to dominant and subdominant epitopes during acute and chronic lymphocytic choriomeningitis virus infection. , 1996, Journal of immunology.
[62] M F del Guercio,et al. Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules. , 1996, Journal of immunology.
[63] Søren Buus,et al. Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide libraries and improved prediction of binding , 1996, European journal of immunology.
[64] M F del Guercio,et al. Definition of an HLA-A3-like supermotif demonstrates the overlapping peptide-binding repertoires of common HLA molecules. , 1996, Human immunology.
[65] M F del Guercio,et al. Prominent roles of secondary anchor residues in peptide binding to HLA-A24 human class I molecules. , 1995, Journal of immunology.
[66] S. Kienle,et al. Decrypting the structure of major histocompatibility complex class I- restricted cytotoxic T lymphocyte epitopes with complex peptide libraries , 1995, The Journal of experimental medicine.
[67] P. Parham,et al. Overlap in the repertoires of peptides bound in vivo by a group of related class I HLA-B allotypes , 1995, Current Biology.
[68] A Sette,et al. Role of HLA-A motifs in identification of potential CTL epitopes in human papillomavirus type 16 E6 and E7 proteins. , 1994, Journal of immunology.
[69] A Sette,et al. Definition of specific peptide motifs for four major HLA-A alleles. , 1994, Journal of immunology.
[70] K. Parker,et al. Endogenous peptides with distinct amino acid anchor residue motifs bind to HLA-A1 and HLA-B8. , 1994, Journal of immunology.
[71] K. Parker,et al. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. , 1994, Journal of immunology.
[72] J. Sidney,et al. Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules , 1993, Cell.
[73] K. Parker,et al. Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2. , 1992, Journal of immunology.
[74] R A Houghten,et al. Rapid identification of high affinity peptide ligands using positional scanning synthetic peptide combinatorial libraries. , 1992, BioTechniques.
[75] H. Rammensee,et al. Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules , 1991, Nature.
[76] E. Coligan. Current protocols in immunology , 1991 .
[77] Eric O Long,et al. Structural model of HLA-DR1 restricted T cell antigen recognition , 1988, Cell.
[78] A. McMichael,et al. Cytotoxic T lymphocytes recognize a fragment of influenza virus matrix protein in association with HLA-A2 , 1987, Nature.