New sub-family of lysozyme-like proteins shows no catalytic activity: crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium

[1]  S. Brunak,et al.  SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.

[2]  Hui Li,et al.  High-throughput protein purification and quality assessment for crystallization. , 2011, Methods.

[3]  Randy J. Read,et al.  Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.

[4]  Ian Sillitoe,et al.  Extending CATH: increasing coverage of the protein structure universe and linking structure with function , 2010, Nucleic Acids Res..

[5]  Thomas Rattei,et al.  Effective—a database of predicted secreted bacterial proteins , 2010, Nucleic Acids Res..

[6]  Elena S. Peterson,et al.  Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria , 2010, Infection and Immunity.

[7]  Liisa Holm,et al.  Dali server: conservation mapping in 3D , 2010, Nucleic Acids Res..

[8]  J. Cort,et al.  DsrR, a Novel IscA-Like Protein Lacking Iron- and Fe-S-Binding Functions, Involved in the Regulation of Sulfur Oxidation in Allochromatium vinosum , 2010, Journal of bacteriology.

[9]  Luis E González de la Vara,et al.  Separation of membrane proteins according to their hydropathy by serial phase partitioning with Triton X-114. , 2009, Analytical biochemistry.

[10]  Ram Samudrala,et al.  Accurate Prediction of Secreted Substrates and Identification of a Conserved Putative Secretion Signal for Type III Secretion Systems , 2009, PLoS pathogens.

[11]  Youngchang Kim,et al.  Large-scale evaluation of protein reductive methylation for improving protein crystallization , 2008, Nature Methods.

[12]  M. Parker,et al.  During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems , 2008, Cellular microbiology.

[13]  K. Henrick,et al.  Inference of macromolecular assemblies from crystalline state. , 2007, Journal of molecular biology.

[14]  Hans Wolf-Watz,et al.  Protein delivery into eukaryotic cells by type III secretion machines , 2006, Nature.

[15]  Wladek Minor,et al.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes. , 2006, Acta crystallographica. Section D, Biological crystallography.

[16]  C. S. Millard,et al.  An expression vector tailored for large-scale, high-throughput purification of recombinant proteins. , 2006, Protein expression and purification.

[17]  Jan Borysowski,et al.  Bacteriophage Endolysins as a Novel Class of Antibacterial Agents , 2006, Experimental biology and medicine.

[18]  M. Loessner,et al.  Bacteriophage endolysins--current state of research and applications. , 2005, Current opinion in microbiology.

[19]  Rolf Apweiler,et al.  InterProScan: protein domains identifier , 2005, Nucleic Acids Res..

[20]  Janet M. Thornton,et al.  ProFunc: a server for predicting protein function from 3D structure , 2005, Nucleic Acids Res..

[21]  M. Rossmann,et al.  Control of bacteriophage T4 tail lysozyme activity during the infection process. , 2005, Journal of molecular biology.

[22]  F. Studier,et al.  Multiple roles of T7 RNA polymerase and T7 lysozyme during bacteriophage T7 infection. , 2004, Journal of molecular biology.

[23]  A. Krogh,et al.  A combined transmembrane topology and signal peptide prediction method. , 2004, Journal of molecular biology.

[24]  H. Unno,et al.  Bacillus amyloliquefaciens phage endolysin can enhance permeability of Pseudomonas aeruginosa outer membrane and induce cell lysis , 2004, Applied Microbiology and Biotechnology.

[25]  Michael R. Yeaman,et al.  Mechanisms of Antimicrobial Peptide Action and Resistance , 2003, Pharmacological Reviews.

[26]  F. Collart,et al.  High throughput methods for gene cloning and expression. , 2002, Protein expression and purification.

[27]  R. Wilson,et al.  Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 , 2001, Nature.

[28]  I. Wang,et al.  Phages will out: strategies of host cell lysis. , 2000, Trends in microbiology.

[29]  Klaus Düring,et al.  The non‐enzymatic microbicidal activity of lysozymes , 1999, FEBS letters.

[30]  R. Laskowski SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions. , 1995, Journal of molecular graphics.

[31]  U. Bläsi,et al.  Holins: form and function in bacteriophage lysis. , 1995, FEMS microbiology reviews.

[32]  B. Matthews,et al.  A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme. , 1993, Science.

[33]  S. Bouvier,et al.  Systematic mutation of bacteriophage T4 lysozyme. , 1991, Journal of molecular biology.

[34]  S. Narang,et al.  Mutation of active site residues in synthetic T4-lysozyme gene and their effect on lytic activity. , 1988, Biochemical and biophysical research communications.

[35]  S. French,et al.  On the treatment of negative intensity observations , 1978 .

[36]  F. Jacob,et al.  The mechanism of lysis by phage studied with defective lysogenic bacteria. , 1958, Journal of general microbiology.

[37]  Scott A Lesley,et al.  The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis. , 2009, Methods in molecular biology.

[38]  Serge X. Cohen,et al.  Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 , 2008, Nature Protocols.

[39]  I. Wang,et al.  Holins: the protein clocks of bacteriophage infections. , 2000, Annual review of microbiology.

[40]  B. Matthews,et al.  The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue. , 1995, Journal of molecular biology.

[41]  J. Kirsch,et al.  Site-directed mutagenesis of the catalytic residues Asp-52 and Glu-35 of chicken egg white lysozyme. , 1989, Proceedings of the National Academy of Sciences of the United States of America.