Impact of RNA degradation on gene expression profiling
暂无分享,去创建一个
Jochen Gaedcke | Peter Jo | Lennart Opitz | Tim Beißbarth | Klaus Jung | T. Beißbarth | L. Opitz | J. Gaedcke | B. Ghadimi | M. Grade | G. Salinas-Riester | B Michael Ghadimi | K. Jung | Marian Grade | Peter Jo | Gabriela Salinas-Riester | Georg Emons | G. Emons | T. Beissbarth
[1] D. Kennell,et al. Evidence that the 5' end of lac mRNA starts to decay as soon as it is synthesized , 1985, Journal of bacteriology.
[2] Thomas Ragg,et al. The RIN: an RNA integrity number for assigning integrity values to RNA measurements , 2006, BMC Molecular Biology.
[3] Haiwei Song,et al. The enzymes and control of eukaryotic mRNA turnover , 2004, Nature Structural &Molecular Biology.
[4] Tatiana Popova,et al. Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues , 2008, BMC Genomics.
[5] Gallya Gannot,et al. Evaluation of non-formalin tissue fixation for molecular profiling studies. , 2002, The American journal of pathology.
[6] R. Simon,et al. Aneuploidy-dependent massive deregulation of the cellular transcriptome and apparent divergence of the Wnt/beta-catenin signaling pathway in human rectal carcinomas. , 2006, Cancer research.
[7] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[8] Karl Kornacker,et al. Chipping away at the chip bias: RNA degradation in microarray analysis , 2003, Nature Genetics.
[9] D. Tollervey,et al. The Many Pathways of RNA Degradation , 2009, Cell.
[10] T. Speed,et al. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. , 2004, Bioinformatics.
[11] P. S. Pine,et al. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA , 2007, BMC biotechnology.
[12] Donna Neuberg,et al. Comparison of frozen and RNALater solid tissue storage methods for use in RNA expression microarrays , 2004, BMC Genomics.
[13] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[14] R. Simon,et al. Effectiveness of gene expression profiling for response prediction of rectal adenocarcinomas to preoperative chemoradiotherapy. , 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[15] D. Cimino,et al. Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays , 2008, Laboratory Investigation.
[16] Qihua Tan,et al. RNA quality and gene expression analysis of ovarian tumor tissue undergoing repeated thaw-freezing. , 2007, Experimental and molecular pathology.
[17] Thomas Lengauer,et al. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..
[18] Yudong D. He,et al. Gene expression profiling predicts clinical outcome of breast cancer , 2002, Nature.
[19] H. Putzer,et al. Structural insights into the dual activity of RNase J , 2008, Nature Structural &Molecular Biology.
[20] David A Jones,et al. Preservation of RNA for Functional Genomic Studies: A Multidisciplinary Tumor Bank Protocol , 2001, Modern Pathology.
[21] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[22] M. Fernö,et al. An improved genetic system for detection and analysis of protein nuclear import signals. , 2007 .
[23] O. Pellegrini,et al. 5′-to-3′ Exoribonuclease Activity in Bacteria: Role of RNase J1 in rRNA Maturation and 5′ Stability of mRNA , 2007, Cell.
[24] A. Moorman,et al. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data , 2003, Neuroscience Letters.
[25] Gordon K Smyth,et al. Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .