Comprehensive large-scale assessment of intrinsic protein disorder
暂无分享,去创建一个
Silvio C. E. Tosatto | Tomás Di Domenico | Carlo Ferrari | Olav Zimmermann | Ian Walsh | Manuel Giollo | S. Tosatto | O. Zimmermann | Ian Walsh | Manuel Giollo | Carlo Ferrari | T. D. Domenico
[1] P. Tompa. Intrinsically unstructured proteins. , 2002, Trends in biochemical sciences.
[2] Maria Jesus Martin,et al. SIFTS: Structure Integration with Function, Taxonomy and Sequences resource , 2012, Nucleic Acids Res..
[3] Avner Schlessinger,et al. Improved Disorder Prediction by Combination of Orthogonal Approaches , 2009, PloS one.
[4] C. Brown,et al. Intrinsic protein disorder in complete genomes. , 2000, Genome informatics. Workshop on Genome Informatics.
[5] B. Rost. Review: protein secondary structure prediction continues to rise. , 2001, Journal of structural biology.
[6] Yutaka Kuroda,et al. POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions , 2007, Bioinform..
[7] Zoran Obradovic,et al. Length-dependent prediction of protein intrinsic disorder , 2006, BMC Bioinformatics.
[8] A. Dunker,et al. Disorder and sequence repeats in hub proteins and their implications for network evolution. , 2006, Journal of proteome research.
[9] Monika Fuxreiter,et al. Close encounters of the third kind: disordered domains and the interactions of proteins , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[10] Jianlin Cheng,et al. DNdisorder: predicting protein disorder using boosting and deep networks , 2013, BMC Bioinformatics.
[11] L. Iakoucheva,et al. Intrinsic Disorder and Protein Function , 2002 .
[12] Zoran Obradovic,et al. DisProt: the Database of Disordered Proteins , 2006, Nucleic Acids Res..
[13] Robert B. Russell,et al. GlobPlot: exploring protein sequences for globularity and disorder , 2003, Nucleic Acids Res..
[14] S. Vucetic,et al. Flavors of protein disorder , 2003, Proteins.
[15] Anna Tramontano,et al. Assessment of protein disorder region predictions in CASP10 , 2014, Proteins.
[16] Silvio C. E. Tosatto,et al. ESpritz: accurate and fast prediction of protein disorder , 2012, Bioinform..
[17] J. Beckmann,et al. FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. , 2005, Bioinformatics.
[18] J. S. Sodhi,et al. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. , 2004, Journal of molecular biology.
[19] Silvio C. E. Tosatto,et al. MOBI: a web server to define and visualize structural mobility in NMR protein ensembles , 2010, Bioinform..
[20] T. Gibson,et al. Protein disorder prediction: implications for structural proteomics. , 2003, Structure.
[21] Kengo Kinoshita,et al. Prediction of disordered regions in proteins based on the meta approach , 2008, Bioinform..
[22] The UniProt Consortium,et al. Reorganizing the protein space at the Universal Protein Resource (UniProt) , 2011, Nucleic Acids Res..
[23] Predrag Radivojac,et al. Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins , 2009, PLoS Comput. Biol..
[24] David S. Goodsell,et al. The RCSB Protein Data Bank: new resources for research and education , 2012, Nucleic Acids Res..
[25] P. Romero,et al. Sequence complexity of disordered protein , 2001, Proteins.
[26] A Keith Dunker,et al. Analysis of structured and intrinsically disordered regions of transmembrane proteins. , 2009, Molecular bioSystems.
[27] David T. Jones,et al. Getting the most from PSI-BLAST. , 2002, Trends in biochemical sciences.
[28] Lukasz A. Kurgan,et al. Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources , 2010, Bioinform..
[29] B. Rost,et al. A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment , 1999, Proteins.
[30] Silvio C. E. Tosatto,et al. MobiDB: a comprehensive database of intrinsic protein disorder annotations , 2012, Bioinform..
[31] Zoran Obradovic,et al. The protein trinity—linking function and disorder , 2001, Nature Biotechnology.
[32] Sonia Longhi,et al. Structural disorder in viral proteins. , 2014, Chemical reviews.
[33] H. Dyson,et al. Linking folding and binding. , 2009, Current opinion in structural biology.
[34] Lukasz A. Kurgan,et al. In-silico prediction of disorder content using hybrid sequence representation , 2011, BMC Bioinformatics.
[35] Kengo Kinoshita,et al. PrDOS: prediction of disordered protein regions from amino acid sequence , 2007, Nucleic Acids Res..
[36] John C. Wootton,et al. Non-globular Domains in Protein Sequences: Automated Segmentation Using Complexity Measures , 1994, Comput. Chem..
[37] P. Tompa,et al. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. , 2005, Journal of molecular biology.
[38] Jaime Prilusky,et al. FoldIndex copyright: a simple tool to predict whether a given protein sequence is intrinsically unfolded , 2005, Bioinform..
[39] Michail Yu. Lobanov,et al. Prediction of Amyloidogenic and Disordered Regions in Protein Chains , 2006, PLoS Comput. Biol..
[40] Roland L. Dunbrack,et al. PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. , 2010, Biochimica et biophysica acta.
[41] Giorgio Valle,et al. Simple consensus procedures are effective and sufficient in secondary structure prediction. , 2003, Protein engineering.
[42] Silvio C. E. Tosatto,et al. CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs , 2011, Nucleic Acids Res..
[43] B. Rost,et al. Protein disorder--a breakthrough invention of evolution? , 2011, Current opinion in structural biology.
[44] Zheng Rong Yang,et al. RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins , 2005, Bioinform..
[45] Gary D Bader,et al. Bringing order to protein disorder through comparative genomics and genetic interactions , 2011, Genome Biology.
[46] J. Silberg,et al. A transposase strategy for creating libraries of circularly permuted proteins , 2012, Nucleic acids research.
[47] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[48] H. Dyson,et al. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. , 1999, Journal of molecular biology.