Profiling bacterial communities by MinION sequencing of ribosomal operons
暂无分享,去创建一个
Lee J Kerkhof | L. McGuinness | L. Kerkhof | M. Häggblom | Max M Häggblom | Kevin P Dillon | Lora R McGuinness | K. P. Dillon
[1] D. Lane. 16S/23S rRNA sequencing , 1991 .
[2] Mick Watson,et al. Successful test launch for nanopore sequencing , 2015, Nature Methods.
[3] Y. Sanz,et al. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer , 2015, bioRxiv.
[4] Susan M. Huse,et al. Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.
[5] Chen Hong,et al. Illumina MiSeq sequencing investigation on the contrasting soil bacterial community structures in different iron mining areas , 2015, Environmental Science and Pollution Research.
[6] P. Myer,et al. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers. , 2016, Journal of microbiological methods.
[7] N. Pace,et al. Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences , 1985, Applied and environmental microbiology.
[8] C. Dekker,et al. DNA sequencing with nanopores , 2012, Nature Biotechnology.
[9] Alvin T. Liem,et al. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer , 2015, GigaScience.
[10] Hongyu Zhang,et al. Bacterial Communities in the Gut and Reproductive Organs of Bactrocera minax (Diptera: Tephritidae) Based on 454 Pyrosequencing , 2014, PloS one.
[11] Anthony O'Donnell,et al. Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform. , 2012, Journal of microbiological methods.
[12] A. Uitterlinden,et al. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA , 1993, Applied and environmental microbiology.
[13] S. Lok,et al. Analysis of the bacterial community in a laboratory-scale nitrification reactor and a wastewater treatment plant by 454-pyrosequencing. , 2011, Water research.
[14] Niranjan Nagarajan,et al. INC-Seq: accurate single molecule reads using nanopore sequencing , 2016, bioRxiv.
[15] N. Loman,et al. A complete bacterial genome assembled de novo using only nanopore sequencing data , 2015, Nature Methods.
[16] Yue Wang,et al. The evolution of nanopore sequencing , 2014, Front. Genet..
[17] G. Casella,et al. Pyrosequencing enumerates and contrasts soil microbial diversity , 2007, The ISME Journal.
[18] C. Brunk,et al. A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. , 1994, BioTechniques.
[19] Stefan Bertilsson,et al. Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity , 2006, Applied and Environmental Microbiology.
[20] Sarah L. Westcott,et al. Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform , 2013, Applied and Environmental Microbiology.
[21] Susan M. Huse,et al. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. , 2009, Journal of microbiological methods.
[22] Jinyang Zhao,et al. Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q , 2017, GigaScience.
[23] B. Yan,et al. A comparison of bacterial community structure in seawater pond with shrimp, crab, and shellfish cultures and in non-cultured pond in Ganyu, Eastern China , 2015, Annals of Microbiology.
[24] Aaron R. Quinlan,et al. Poretools: a toolkit for analyzing nanopore sequence data , 2014, bioRxiv.
[25] David A. Eccles,et al. MinION Analysis and Reference Consortium: Phase 1 data release and analysis , 2015, F1000Research.
[26] L. Kerkhof,et al. Replicability of bacterial communities in denitrifying bioreactors as measured by PCR/T-RFLP analysis. , 2006, Environmental science & technology.
[27] C. Wallis,et al. Pyrosequencing the Canine Faecal Microbiota: Breadth and Depth of Biodiversity , 2013, PloS one.
[28] MinIONTM nanopore sequencing of environmental metagenomes , 2017 .
[29] Byung-Kwan Cho,et al. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing , 2016, Scientific Reports.
[30] J. Verhoef,et al. Molecular identification of bacteria by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene , 1995, Journal of clinical microbiology.
[31] Robert S. Harris,et al. Improved pairwise alignment of genomic dna , 2007 .
[32] M. Häggblom,et al. Effect of Freeze-Thaw Cycles on Bacterial Communities of Arctic Tundra Soil , 2009, Microbial Ecology.
[33] M. Forsman,et al. Scaffolding of a bacterial genome using MinION nanopore sequencing , 2015, Scientific Reports.
[34] Jun Chen,et al. Comparison of the fecal microbiota of dholes high-throughput Illumina sequencing of the V3–V4 region of the 16S rRNA gene , 2016, Applied Microbiology and Biotechnology.
[35] Stefan Engelen,et al. Genome assembly using Nanopore-guided long and error-free DNA reads , 2015, BMC Genomics.
[36] N. Tam,et al. Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland , 2013, Microbial Ecology.
[37] Hugh E. Olsen,et al. The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community , 2016, Genome Biology.
[38] N. Pace,et al. Microbial ecology and evolution: a ribosomal RNA approach. , 1986, Annual review of microbiology.