Fractal analysis on root systems of rice plants in response to drought stress

Abstract A fractal analytical method was used to examine the developmental responses of root systems in upland rice genotype CT9993-5-10-1-M (japonica) and lowland genotype IR62266-42-6-2 (indica) (abbreviated as CT9993 and IR62266, respectively) to soil water stress. The root systems were grown for one month in root boxes with 25 cm in length, 2 cm in width and 40 cm in depth, which were filled with soil. The root systems were sampled by following the needle-pinboard method, and then spread on the transparent plastic films with nets after carefully washing out the soils. The two-dimensional images of root systems were digitized by using a scanner. The digitized images were used for analysis based on fractal geometry with the box-counting method. The reductions in shoot dry weight, photosynthesis rate and transpiration rate of IR62266 by soil drought were greater than those of CT9993. The change of fractal parameters in response to soil moisture conditions differed between the two rice genotypes. The values of fractal abundance (FA) and fractal dimension (FD) in well-watered IR62266 plants were larger than in CT9993. The value of FA of IR62266 was decreased more by drought stress than that of CT9993, indicating that the volume of soils explored by the whole root systems of CT9993 was maintained or less decreased under drought stress in comparison to IR62266. Moreover, the values of FD tended to increase in CT9993 while it tended to decrease in IR62266 in response to drought. These root responses detected by the fractal analysis in CT9993 may be advantageous for its extracting more water from drying soils, which explains its better growth under drought-stressed condition.

[1]  B. Courtois,et al.  Genotypic and environmental variations in root morphology in rice genotypes under upland field conditions , 2003, Plant and Soil.

[2]  A. Yamauchi,et al.  Genotypic Variation in Response of Rainfed Lowland Rice to Drought and Rewatering. III. Water extraction during the drought period , 2000 .

[3]  Jiro Tatsumi,et al.  Fractal Geometry in Root Systems : Quantitative Evaluation of Distribution Pattern , 1995 .

[4]  Franti¿ek Balu¿ka,et al.  Plant-Environment Interactions , 2009 .

[5]  A. Yamauchi,et al.  Genotypic Variation in Response of Rainfed Lowland Rice to Drought and Rewatering , 2000 .

[6]  A. Yamauchi,et al.  A Revised Experimental System of Root-Soil Interaction for Laboratory Workr , 1987 .

[7]  Akira Yamauchi,et al.  Root Development and Nutrient Uptake , 2006 .

[8]  J. M. Lilley,et al.  Expression of osmotic adjustment and dehydration tolerance in diverse rice lines , 1996 .

[9]  H. Nguyen,et al.  QTL analysis on plasticity in lateral root development in response to water stress in the rice plant. , 2005 .

[10]  B. K. Samson,et al.  Penetration of hardpans by rice lines in the rainfed lowlands , 2002 .

[11]  S. Fukai,et al.  Development of drought-resistant cultivars using physiomorphological traits in rice , 1995 .

[12]  Kalyani Weerasinghe Ketipearachchi,et al.  Local Fractal Dimensions and Multifractal Analysis of the Root System of Legumes , 2000 .

[13]  J. W. Maranville,et al.  Evaluation of sorghum root branching using fractals , 1998, The Journal of Agricultural Science.

[14]  Akira Yamauchi,et al.  Fractal Analysis of Plant Root Systems , 1989 .

[15]  A. Yamauchi,et al.  Root Growth and Water Extraction Response of Doubled-Haploid Rice Lines to Drought and Rewatering during the Vegetative Stage , 2005 .

[16]  Osamu Ito,et al.  Dynamics of Roots and Nitrogen in Cropping Systems of the Semi-Arid Tropics , 1996 .

[17]  J. Lynch Root Architecture and Plant Productivity , 1995, Plant physiology.

[18]  A. Block,et al.  Fractal geometry and root system structures of heterogeneous plant communities , 2005, Plant and Soil.

[19]  R. Evenson,et al.  Rice Research in Asia: Progress and Priorities , 1996 .

[20]  B. Courtois,et al.  Mapping QTLs associated with drought resistance in rice: Progress, problems and prospects , 1999, Plant Growth Regulation.

[21]  M. Iijima,et al.  Analysis of Timecourse Changes in Root System Morphology of Rice in Excised Root Culture , 1995 .

[22]  Hong Wang,et al.  Growth and Function of Roots under Abiotic Stress in Soils , 2006 .

[23]  A. Fitter 11 – Architecture and Biomass Allocation as Components of the Plastic Response of Root Systems to Soil Heterogeneity , 1994 .

[24]  N. Ahmadi,et al.  Upland rice for highlands: New varieties and sustainable cropping systems for food security promising prospects for the global challenges of rice production the world will face in the coming years? , 2004 .

[25]  K. L. Heong,et al.  Rice is life: scientific perspectives for the 21st century. Proceedings of the World Rice Research Conference held in Tsukuba, Japan, 4-7 November 2004. , 2005 .

[26]  J.-Y. Parlange,et al.  Fractals in soil science , 1998 .

[27]  K. Kimura,et al.  Accurate root length and diameter measurement using NIH Image: use of Pythagorean distance for diameter estimation , 2003, Plant and Soil.

[28]  K. L. Nielsen,et al.  Fractal geometry of bean root systems: correlations between spatial and fractal dimension. , 1997, American journal of botany.

[29]  G. Khush,et al.  The world rice economy: challenges ahead. , 1991 .

[30]  Kazuhiko Kimura,et al.  Accurate root length measurement by image analysis , 1999, Plant and Soil.

[31]  A. Yamauchi,et al.  Growth and Water Use Response of Doubled-Haploid Rice Linesto Drought and Rewatering during the Vegetative Stage , 2006 .

[32]  Alastair H. Fitter,et al.  Fractal Characterization of Root System Architecture , 1992 .

[33]  A. Price,et al.  Upland rice grown in soil-filled chambers and exposed to contrasting water-deficit regimes: II. Mapping quantitative trait loci for root morphology and distribution , 2002 .

[34]  Honggang Zheng,et al.  Locating genomic regions associated with components of drought resistance in rice: comparative mapping within and across species , 2001, Theoretical and Applied Genetics.

[35]  Sarwoto,et al.  Genotype by environment interactions across diverse rainfed lowland rice environments , 1999 .

[36]  K. T. Ingram,et al.  Comparison of selection indices to screen lowland rice for drought resistance , 1990, Euphytica.

[37]  A. Yamauchi,et al.  Genotypic Variation in Response of Rainfed Lowland Rice to Prolonged Drought and Rewatering , 2004 .

[38]  A. Yamauchi,et al.  Genotypic Variation in Response of Rainfed Lowland Rice to Drought and Rewatering , 2000 .

[39]  P. Pfeifer,et al.  Microbial growth patterns described by fractal geometry , 1990, Journal of bacteriology.

[40]  Jing-xia Zhang,et al.  Effects of Phenotyping Environment on Identification of Quantitative Trait Loci for Rice Root Morphology under Anaerobic Conditions. , 2002, Crop science.

[41]  J. Maclean,et al.  Rice Almanac: source book for the most important economic activity on earth. , 2002 .

[42]  H. Nguyen,et al.  Saturation mapping of QTL regions and identification of putative candidate genes for drought tolerance in rice , 2004, Molecular Genetics and Genomics.

[43]  Jonathan P Lynch,et al.  Modelling applicability of fractal analysis to efficiency of soil exploration by roots. , 2004, Annals of botany.

[44]  S. Bhuiyan,et al.  Opportunities to manipulate nutrient-by-water interactions in rainfed lowland rice systems , 1998 .

[45]  J. Abe,et al.  Genotypic Variation in Root Growth Angle in Rice (Oryza sativa L.) and its Association with Deep Root Development in Upland Fields with Different Water Regimes , 2006, Plant and Soil.

[46]  C. Mendoza,et al.  Progress in upland rice research , 1986 .

[47]  C. Sparrow The Fractal Geometry of Nature , 1984 .

[48]  Alastair H. Fitter,et al.  Characteristics and Functions of Root Systems , 2002 .

[49]  M. Iijima,et al.  Quantitative Analysis of the Architecture of Seminal Root System of Rice (Oryza sativa L.) Grown under Different Soil Moisture Conditions , 1997 .

[50]  K. L. Nielsen,et al.  Fractal geometry of root systems: Field observations of contrasting genotypes of common bean (Phaseolus vulgaris L.) grown under different phosphorus regimes , 1999, Plant and Soil.

[51]  A. Yamauchi,et al.  Genotypic Variations in Response of Lateral Root Development to Fluctuating Soil Moisture in Rice , 2000 .

[52]  A. Eshel,et al.  On the fractal dimensions of a root system , 1998 .

[53]  J. Lynch,et al.  Growth and architecture of seedling roots of common bean genotypes , 1993 .

[54]  M. Kirkham Book reviewDrought resistance in crops with emphasis on rice: International Rice Research Institute, Los Baños, Laguna/Manila, The Philippines, 1982. 414 pp., US$16.25 plus airmail (US$14.50) or surface mail (US$1.75) postage. ISBN 971-104-078-6 , 1984 .

[55]  J. Zhang,et al.  Mapping QTLs for root morphology of a rice population adapted to rainfed lowland conditions , 2002, Theoretical and Applied Genetics.

[56]  Y. Inukai,et al.  Genotypic Variations in Responses of Lateral Root Development to Transient Moisture Stresses in Rice Cultivars , 2008 .

[57]  A. Yamauchi,et al.  Root growth, aerenchyma development, and oxygen transport in rice genotypes subjected to drought and waterlogging , 2008 .