Gene Therapy for Cystic Fibrosis Lung Disease: Overcoming the Barriers to Translation to the Clinic

Cystic fibrosis (CF) is a progressive, chronic and debilitating genetic disease caused by mutations in the CF Transmembrane-Conductance Regulator (CFTR) gene. Unrelenting airway disease begins in infancy and produces a steady deterioration in quality of life, ultimately leading to premature death. While life expectancy has improved, current treatments for CF are neither preventive nor curative. Since the discovery of CFTR the vision of correcting the underlying genetic defect – not just treating the symptoms – has been developed to where it is poised to become a transformative technology. Addition of a properly functioning CFTR gene into defective airway cells is the only biologically rational way to prevent or treat CF airway disease for all CFTR mutation classes. While new gene editing approaches hold exciting promise, airway gene-addition therapy remains the most encouraging therapeutic approach for CF. However, early work has not yet progressed to large-scale clinical trials. For clinical trials to begin in earnest the field must demonstrate that gene therapies are safe in CF lungs; can provide clear health benefits and alter the course of lung disease; can be repeatedly dosed to boost effect; and can be scaled effectively from small animal models into human-sized lungs. Demonstrating the durability of these effects demands relevant CF animal models and accurate and reliable techniques to measure benefit. In this review, illustrated with data from our own studies, we outline recent technological developments and discuss these key questions that we believe must be answered to progress CF airway gene-addition therapies to clinical trials.

[1]  M. Donnelley,et al.  Lobe-Specific Gene Vector Delivery to Rat Lungs Using a Miniature Bronchoscope. , 2018, Human gene therapy methods.

[2]  Kathleen A. Marshall,et al.  Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial , 2017, The Lancet.

[3]  Thomas Ferkol,et al.  Repeated aerosolized AAV-CFTR for treatment of cystic fibrosis: a randomized placebo-controlled phase 2B trial. , 2007, Human gene therapy.

[4]  R. Ruseckaite,et al.  The Australian Cystic Fibrosis Data Registry Annual Report, 2017 , 2018 .

[5]  P. Kantoff,et al.  Self-inactivating retroviral vectors designed for transfer of whole genes into mammalian cells. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[6]  C. Morrison Fresh from the biotech pipeline—2017 , 2018, Nature Biotechnology.

[7]  Martin Donnelley,et al.  Challenges of up-scaling lentivirus production and processing. , 2016, Journal of biotechnology.

[8]  Andreas Fouras,et al.  Live small-animal X-ray lung velocimetry and lung micro-tomography at the Australian Synchrotron Imaging and Medical Beamline. , 2015, Journal of synchrotron radiation.

[9]  Y. Kaneda,et al.  Current status of gene therapy in Asia. , 2008, Molecular therapy : the journal of the American Society of Gene Therapy.

[10]  Martin Donnelley,et al.  Airway disease phenotypes in animal models of cystic fibrosis , 2018, Respiratory Research.

[11]  L. Cebotaru,et al.  Adeno-Associated Virus (AAV) gene therapy for cystic fibrosis: current barriers and recent developments , 2017, Expert opinion on biological therapy.

[12]  Gregg A. Duncan,et al.  Barriers to inhaled gene therapy of obstructive lung diseases: A review. , 2016, Journal of controlled release : official journal of the Controlled Release Society.

[13]  Martin Donnelley,et al.  High-resolution mucociliary transport measurement in live excised large animal trachea using synchrotron X-ray imaging , 2017, Respiratory Research.

[14]  Gregg A. Duncan,et al.  The Mucus Barrier to Inhaled Gene Therapy. , 2016, Molecular therapy : the journal of the American Society of Gene Therapy.

[15]  J. Davies,et al.  Cystic fibrosis gene therapy: a mutation-independent treatment , 2016, Current opinion in pulmonary medicine.

[16]  M. Donnelley,et al.  Large-scale production of lentiviral vectors using multilayer cell factories , 2018, Journal of biological methods.

[17]  D. Trono,et al.  A Third-Generation Lentivirus Vector with a Conditional Packaging System , 1998, Journal of Virology.

[18]  P. Sinn,et al.  Lentivirus Vector Can Be Readministered to Nasal Epithelia without Blocking Immune Responses , 2008, Journal of Virology.

[19]  D. Meyerholz,et al.  Widespread airway distribution and short-term phenotypic correction of cystic fibrosis pigs following aerosol delivery of piggyBac/adenovirus , 2018, Nucleic acids research.

[20]  M. Conese,et al.  Lentivirus-mediated gene transfer to the respiratory epithelium: a promising approach to gene therapy of cystic fibrosis , 2004, Gene therapy.

[21]  Andreas Fouras,et al.  Non-invasive airway health assessment: Synchrotron imaging reveals effects of rehydrating treatments on mucociliary transit in-vivo , 2014, Scientific Reports.

[22]  D. Porteous,et al.  Assessment of F/HN-pseudotyped lentivirus as a clinically relevant vector for lung gene therapy. , 2012, American journal of respiratory and critical care medicine.

[23]  Guillermo J Tearney,et al.  Development of an airway mucus defect in the cystic fibrosis rat. , 2018, JCI insight.

[24]  G. Mengozzi,et al.  Assessment of Diagnostic and Prognostic Role of Copeptin in the Clinical Setting of Sepsis , 2016, BioMed research international.

[25]  N. McElvaney,et al.  Animal Models of Cystic Fibrosis Pathology: Phenotypic Parallels and Divergences , 2016, BioMed research international.

[26]  Kentaro Uesugi,et al.  Measuring Airway Surface Liquid Depth in Ex Vivo Mouse Airways by X-Ray Imaging for the Assessment of Cystic Fibrosis Airway Therapies , 2013, PloS one.

[27]  A. Coates,et al.  Efficient Gene Delivery to Pig Airway Epithelia and Submucosal Glands Using Helper-Dependent Adenoviral Vectors , 2013, Molecular therapy. Nucleic acids.

[28]  David K Meyerholz,et al.  Disease phenotype of a ferret CFTR-knockout model of cystic fibrosis. , 2010, The Journal of clinical investigation.

[29]  T. Conlon,et al.  A Preclinical Study in Rhesus Macaques for Cystic Fibrosis to Assess Gene Transfer and Transduction by AAV1 and AAV5 with a Dual-Luciferase Reporter System. , 2017, Human gene therapy. Clinical development.

[30]  I. Alexander,et al.  Gene therapy clinical trials worldwide to 2017: An update , 2018, The journal of gene medicine.

[31]  F. Bushman,et al.  Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1. , 2008, The Journal of clinical investigation.

[32]  K K W Siu,et al.  Phase contrast X-ray imaging for the non-invasive detection of airway surfaces and lumen characteristics in mouse models of airway disease. , 2008, European journal of radiology.

[33]  M. Donnelley,et al.  Long‐term therapeutic and reporter gene expression in lentiviral vector treated cystic fibrosis mice , 2014, The journal of gene medicine.

[34]  M. Donnelley,et al.  Dry deposition of pollutant and marker particles onto live mouse airway surfaces enhances monitoring of individual particle mucociliary transit behaviour. , 2012, Journal of synchrotron radiation.

[35]  D. Parsons,et al.  Lentiviral airway gene transfer in lungs of mice and sheep: successes and challenges , 2010, The journal of gene medicine.

[36]  M. Milone,et al.  Clinical use of lentiviral vectors , 2018, Leukemia.

[37]  M. Donnelley,et al.  Transduction of ferret airway epithelia using a pre-treatment and lentiviral gene vector , 2014, BMC Pulmonary Medicine.

[38]  M. Donnelley,et al.  Role of Basal Cells in Producing Persistent Lentivirus-Mediated Airway Gene Expression. , 2018, Human gene therapy.

[39]  D. Schaffer,et al.  CFTR gene transfer with AAV improves early cystic fibrosis pig phenotypes. , 2016, JCI insight.

[40]  Martin Donnelley,et al.  Capturing and visualizing transient X-ray wavefront topological features by single-grid phase imaging. , 2016, Optics express.

[41]  J. Pepper,et al.  Potential difference measurements in the lower airway of children with and without cystic fibrosis. , 2005, American journal of respiratory and critical care medicine.

[42]  Scott H. Randell,et al.  Basal cells as stem cells of the mouse trachea and human airway epithelium , 2009, Proceedings of the National Academy of Sciences.

[43]  M. Donnelley,et al.  Gene therapy for Cystic Fibrosis: Improved delivery techniques and conditioning with lysophosphatidylcholine enhance lentiviral gene transfer in mouse lung airways , 2017, Experimental lung research.

[44]  D. Meyerholz,et al.  Pathology of gastrointestinal organs in a porcine model of cystic fibrosis. , 2010, The American journal of pathology.

[45]  S. Waddington,et al.  Gene Therapy with Adeno-associated Virus for Cystic Fibrosis. , 2016, American journal of respiratory and critical care medicine.

[46]  D. Parsons,et al.  Recovery of airway cystic fibrosis transmembrane conductance regulator function in mice with cystic fibrosis after single-dose lentivirus-mediated gene transfer. , 2002, Human gene therapy.

[47]  K K W Siu,et al.  Synchrotron phase-contrast X-ray imaging reveals fluid dosing dynamics for gene transfer into mouse airways , 2012, Gene Therapy.

[48]  J. T. Fisher,et al.  Lung phenotype of juvenile and adult cystic fibrosis transmembrane conductance regulator-knockout ferrets. , 2014, American journal of respiratory cell and molecular biology.

[49]  D. Meyerholz,et al.  Lentiviral-mediated phenotypic correction of cystic fibrosis pigs. , 2016, JCI insight.

[50]  T. Gureyev,et al.  CT dose reduction factors in the thousands using X-ray phase contrast , 2017, Scientific Reports.

[51]  D. Meyerholz Lessons learned from the cystic fibrosis pig. , 2016, Theriogenology.

[52]  Christine Kinnon,et al.  Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients. , 2008, The Journal of clinical investigation.

[53]  Cedric M. Smith,et al.  Origin and Uses of Primum Non Nocere—Above All, Do No Harm! , 2005, Journal of clinical pharmacology.

[54]  K. Chu,et al.  Characterization of Defects in Ion Transport and Tissue Development in Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)-Knockout Rats , 2014, PloS one.

[55]  Gaurav Sahay,et al.  Lipid Nanoparticle-Delivered Chemically Modified mRNA Restores Chloride Secretion in Cystic Fibrosis. , 2018, Molecular therapy : the journal of the American Society of Gene Therapy.

[56]  Franz Pfeiffer,et al.  In vivo Dynamic Phase-Contrast X-ray Imaging using a Compact Light Source , 2018, Scientific Reports.

[57]  Andreas Fouras,et al.  Altered Lung Motion is a Sensitive Indicator of Regional Lung Disease , 2011, Annals of Biomedical Engineering.

[58]  Steve Cunningham,et al.  Repeated nebulisation of non-viral CFTR gene therapy in patients with cystic fibrosis: a randomised, double-blind, placebo-controlled, phase 2b trial , 2015 .

[59]  Gregg A. Duncan,et al.  An Adeno-Associated Viral Vector Capable of Penetrating the Mucus Barrier to Inhaled Gene Therapy , 2018, Molecular therapy. Methods & clinical development.

[60]  A. Doherty,et al.  Preparation for a first-in-man lentivirus trial in patients with cystic fibrosis , 2016, Thorax.

[61]  Andreas Fouras,et al.  Quantification of heterogeneity in lung disease with image-based pulmonary function testing , 2016, Scientific Reports.

[62]  M. Flume,et al.  Early Insights from Commercialization of Gene Therapies in Europe , 2017, Genes.

[63]  D. Parsons,et al.  Single‐dose lentiviral gene transfer for lifetime airway gene expression , 2009, The journal of gene medicine.

[64]  M. Donnelley,et al.  Airway gene transfer in a non-human primate: Lentiviral gene expression in marmoset lungs , 2013, Scientific Reports.