A ‘DNA replication’ signature of progression and negative outcome in colorectal cancer

Colorectal cancer is one of the most frequent cancers worldwide. As the tumor-node-metastasis (TNM) staging classification does not allow to predict the survival of patients in many cases, additional prognostic factors are needed to better forecast their outcome. Genes involved in DNA replication may represent an underexplored source of such prognostic markers. Indeed, accidents during DNA replication can trigger ‘replicative stress’, one of the main features of cancer from earlier stages onward. In this study, we assessed the expression of 47 ‘DNA replication’ genes in primary tumors and adjacent normal tissues from a homogeneous series of 74 patients. We found that genes coding for translesional (TLS) DNA polymerases, initiation of DNA replication, S-phase signaling and protection of replication forks were significantly deregulated in tumors. We also observed that the overexpression of either the MCM7 helicase or the TLS DNA polymerase POLQ (if also associated with a concomitant overexpression of firing genes) was significantly related to poor patient survival. Our data suggest the existence of a ‘DNA replication signature’ that might represent a source of new prognostic markers. Such a signature could help in understanding the molecular mechanisms underlying tumor progression in colorectal cancer patients.

[1]  J. Vijg,et al.  DNA structure-induced genomic instability in vivo. , 2008, Journal of the National Cancer Institute.

[2]  R. Monnat,et al.  Human DNA Polymerase η Is Required for Common Fragile Site Stability during Unperturbed DNA Replication , 2009, Molecular and Cellular Biology.

[3]  A. Facoetti,et al.  Minichromosome maintenance protein 7: a reliable tool for glioblastoma proliferation index. , 2006, Anticancer research.

[4]  J. Piette,et al.  Novel evidences for a tumor suppressor role of Rev3, the catalytic subunit of Pol ζ , 2008, Oncogene.

[5]  A. Lehmann,et al.  The Y-family DNA polymerase κ (pol κ) functions in mammalian nucleotide-excision repair , 2006, Nature Cell Biology.

[6]  D. Petereit,et al.  Comparative analysis of cervical cancer in women and in a human papillomavirus-transgenic mouse model: identification of minichromosome maintenance protein 7 as an informative biomarker for human cervical cancer. , 2003, Cancer research.

[7]  S. Elledge,et al.  Minichromosome maintenance proteins are direct targets of the ATM and ATR checkpoint kinases. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[8]  A. Gartner,et al.  Excess Mcm2–7 license dormant origins of replication that can be used under conditions of replicative stress , 2006, The Journal of cell biology.

[9]  K. Shin‐ya,et al.  Role of TLS DNA polymerases eta and kappa in processing naturally occurring structured DNA in human cells , 2009, Molecular carcinogenesis.

[10]  J. Derisi,et al.  Genome-wide mapping of DNA synthesis in Saccharomyces cerevisiae reveals that mechanisms preventing reinitiation of DNA replication are not redundant. , 2006, Molecular biology of the cell.

[11]  Vassilis G Gorgoulis,et al.  Overexpression of the replication licensing regulators hCdt1 and hCdc6 characterizes a subset of non-small-cell lung carcinomas: synergistic effect with mutant p53 on tumor growth and chromosomal instability--evidence of E2F-1 transcriptional control over hCdt1. , 2004, The American journal of pathology.

[12]  M. Albertella,et al.  The overexpression of specialized DNA polymerases in cancer. , 2005, DNA repair.

[13]  T. Kunkel,et al.  Considering the cancer consequences of altered DNA polymerase function. , 2003, Cancer cell.

[14]  D. Fremont,et al.  Oncogenic potential of the DNA replication licensing protein CDT1 , 2002, Oncogene.

[15]  A. Sancar Mechanisms of DNA excision repair. , 1994, Science.

[16]  L. Loeb,et al.  Mutation at the Polymerase Active Site of Mouse DNA Polymerase δ Increases Genomic Instability and Accelerates Tumorigenesis , 2007, Molecular and Cellular Biology.

[17]  R. Wood,et al.  Loss of DNA Polymerase ζ Causes Chromosomal Instability in Mammalian Cells , 2006 .

[18]  Jia-qing Li,et al.  Loss of p57KIP2 is associated with colorectal carcinogenesis. , 2003, International journal of oncology.

[19]  M. Méchali,et al.  A Cdt1–geminin complex licenses chromatin for DNA replication and prevents rereplication during S phase in Xenopus , 2006, The EMBO journal.

[20]  Dimitris Kletsas,et al.  Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints , 2006, Nature.

[21]  Chikahide Masutani,et al.  The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η , 1999, Nature.

[22]  S. West,et al.  Human DNA polymerase eta promotes DNA synthesis from strand invasion intermediates of homologous recombination. , 2005, Molecular cell.

[23]  S. Bingham,et al.  Analysis of minichromosome maintenance proteins as a novel method for detection of colorectal cancer in stool , 2002, The Lancet.

[24]  P. Callas,et al.  DNA replication regulation protein Mcm7 as a marker of proliferation in prostate cancer , 2004, Journal of Clinical Pathology.

[25]  P. Pourquier,et al.  The DNA polymerase λ is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells , 2006, Nucleic acids research.

[26]  M. Osaki,et al.  Minichromosome maintenance protein 7 in colorectal cancer: implication of prognostic significance. , 2008, International journal of oncology.

[27]  D. Roop,et al.  Deregulated minichromosomal maintenance protein MCM7 contributes to oncogene driven tumorigenesis , 2006, Oncogene.

[28]  F. Yamasaki,et al.  Geminin: A good prognostic factor in high‐grade astrocytic brain tumors , 2007, Cancer.

[29]  P. Morbini,et al.  Immunohistochemical evaluation of minichromosome maintenance protein 7 in astrocytoma grading. , 2006, Anticancer research.

[30]  P. Hanawalt Paradigms for the three rs: DNA replication, recombination, and repair. , 2007, Molecular cell.

[31]  T. Kunkel,et al.  A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining. , 2005, Molecular cell.

[32]  I. Bahar,et al.  High‐efficiency bypass of DNA damage by human DNA polymerase Q , 2004, The EMBO journal.

[33]  J. Hoeijmakers,et al.  Divide and conquer: nucleotide excision repair battles cancer and ageing. , 2003, Current opinion in cell biology.

[34]  D. Trouche,et al.  The p400/Tip60 ratio is critical for colorectal cancer cell proliferation through DNA damage response pathways , 2009, Oncogene.

[35]  O. Cuvier,et al.  MCM8 Is an MCM2-7-Related Protein that Functions as a DNA Helicase during Replication Elongation and Not Initiation , 2005, Cell.

[36]  Xun Hu,et al.  Down-regulation of DNA polymerases κ, η, ι, and ζ in human lung, stomach, and colorectal cancers , 2005 .

[37]  S. D. Pena,et al.  Characterization of promoter regulatory elements involved in downexpression of the DNA polymerase κ in colorectal cancer , 2007, Oncogene.

[38]  Samuel H. Wilson,et al.  Requirement of mammalian DNA polymerase-β in base-excision repair , 1996, Nature.

[39]  Michael A. Gonzalez,et al.  Geminin predicts adverse clinical outcome in breast cancer by reflecting cell‐cycle progression , 2004, The Journal of pathology.