Searching for regulatory elements in human noncoding sequences.
暂无分享,去创建一个
[1] Cary Queen,et al. Improvements to a program for DNA analysis: a procedure to find homologies among many sequences , 1982, Nucleic Acids Res..
[2] M. Waterman,et al. Pattern recognition in several sequences: consensus and alignment. , 1984, Bulletin of mathematical biology.
[3] Wen-Hsiung Li,et al. Evolution of DNA Sequences , 1985 .
[4] M. Nei. Molecular Evolutionary Genetics , 1987 .
[5] B. Paterson,et al. A 40-base-pair sequence in the 3' end of the beta-actin gene regulates beta-actin mRNA transcription during myogenesis. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[6] M. Goodman,et al. Embryonic ε and γ globin genes of a prosimian primate (Galago crassicaudatus): Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints , 1988 .
[7] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[8] B. Moav,et al. Functional analysis of elements affecting expression of the beta-actin gene of carp. , 1990, Molecular and cellular biology.
[9] T R Tiersch,et al. On the evolution of genome size of birds. , 1991, The Journal of heredity.
[10] L. Hood,et al. Model genomes: the benefits of analysing homologous human and mouse sequences. , 1992, Trends in biotechnology.
[11] C Burks,et al. The density of transcriptional elements in promoter and non-promoter sequences. , 1993, Human molecular genetics.
[12] Jun S. Liu,et al. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. , 1993, Science.
[13] L. Duret,et al. Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression. , 1993, Nucleic acids research.
[14] David Ghosh,et al. Status of the transcription factors database (TFD) , 1993, Nucleic Acids Res..
[15] R. Jackson,et al. Cytoplasmic regulation of mRNA function: The importance of the 3′ untranslated region , 1993, Cell.
[16] R. Singer,et al. Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype , 1994, The Journal of cell biology.
[17] M. Gouy,et al. HOVERGEN: a database of homologous vertebrate genes. , 1994, Nucleic acids research.
[18] D. S. Prestridge. Predicting Pol II promoter sequences using transcription factor binding sites. , 1995, Journal of molecular biology.
[19] E. Wingender,et al. A compilation of composite regulatory elements affecting gene transcription in vertebrates. , 1995, Nucleic acids research.
[20] Hanah Margalit,et al. Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon , 1995, Comput. Appl. Biosci..
[21] S. Brenner,et al. Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[22] Gary D. Stormo,et al. MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices , 1995, Comput. Appl. Biosci..
[23] Alexander E. Kel,et al. Eukaryotic promoter recognition by binding sites for transcription factors , 1995, Comput. Appl. Biosci..
[24] S Brunak,et al. Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal. , 1995, Nucleic acids research.
[25] B. Koop,et al. Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution. , 1995, Trends in genetics : TIG.
[26] T. Werner,et al. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. , 1995, Nucleic acids research.
[27] A V Ulyanov,et al. Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions. , 1995, Nucleic acids research.
[28] J. Fickett. Quantitative Discrimination of MEF 2 Sites , 1995 .
[29] Alexander E. Kel,et al. Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences , 1995, ISMB.
[30] Richard S. Mann,et al. Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx , 1995, Cell.
[31] S. Brenner,et al. Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes). , 1996, Trends in genetics : TIG.
[32] P. Bucher,et al. Elf-1 and Stat5 bind to a critical element in a new enhancer of the human interleukin-2 receptor alpha gene , 1996, Molecular and cellular biology.
[33] M. I. Lomax,et al. Phylogenetic footprinting of the human cytochrome c oxidase subunit VB promoter. , 1996, Archives of biochemistry and biophysics.
[34] S. Eddy. Hidden Markov models. , 1996, Current opinion in structural biology.
[35] K Frech,et al. Common modular structure of lentivirus LTRs. , 1996, Virology.
[36] M. Goodman,et al. Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes. , 1996, Molecular phylogenetics and evolution.
[37] S. Cross,et al. CpG islands of chicken are concentrated on microchromosomes , 1996, Nature Genetics.
[38] Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus , 1996 .
[39] J. Fickett. Copyright � 1996, American Society for Microbiology Quantitative Discrimination of MEF2 Sites , 1995 .
[40] J. Fickett. Coordinate positioning of MEF2 and myogenin binding sites. , 1996, Gene.
[41] Wei Zhu,et al. Evolutionary Strategies for the Elucidation ofcisandtransFactors That Regulate the Developmental Switching Programs of the β-like Globin Genes , 1996 .
[42] Grit Herrmann,et al. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm , 1996, Comput. Appl. Biosci..
[43] G. B. Hutchinson,et al. The prediction of vertebrate promoter regions using differential hexamer frequency analysis , 1996, Comput. Appl. Biosci..
[44] Dan S. Prestridge,et al. SIGNAL SCAN 4.0: additional databases and sequence formats , 1996, Comput. Appl. Biosci..
[45] T. Werner,et al. GenomeInspector: basic software tools for analysis of spatial correlations between genomic structures within megabase sequences. , 1996, Genomics.
[46] Holger Karas,et al. TRANSFAC: a database on transcription factors and their DNA binding sites , 1996, Nucleic Acids Res..
[47] J W Fickett,et al. Finding genes by computer: the state of the art. , 1996, Trends in genetics : TIG.
[48] Ying Xu,et al. Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence , 1996, Comput. Chem..
[49] Pierre Baldi,et al. Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models , 1996, ISMB.
[50] P. Bucher,et al. Elf-1 and Stat5 bind to a critical element in a new enhancer of the human interleukin-2 receptor alpha gene , 1997, Molecular and cellular biology.