Fluorescence-Based Bioassays for the Detection and Evaluation of Food Materials

We summarize here the recent progress in fluorescence-based bioassays for the detection and evaluation of food materials by focusing on fluorescent dyes used in bioassays and applications of these assays for food safety, quality and efficacy. Fluorescent dyes have been used in various bioassays, such as biosensing, cell assay, energy transfer-based assay, probing, protein/immunological assay and microarray/biochip assay. Among the arrays used in microarray/biochip assay, fluorescence-based microarrays/biochips, such as antibody/protein microarrays, bead/suspension arrays, capillary/sensor arrays, DNA microarrays/polymerase chain reaction (PCR)-based arrays, glycan/lectin arrays, immunoassay/enzyme-linked immunosorbent assay (ELISA)-based arrays, microfluidic chips and tissue arrays, have been developed and used for the assessment of allergy/poisoning/toxicity, contamination and efficacy/mechanism, and quality control/safety. DNA microarray assays have been used widely for food safety and quality as well as searches for active components. DNA microarray-based gene expression profiling may be useful for such purposes due to its advantages in the evaluation of pathway-based intracellular signaling in response to food materials.

[1]  David Dobnik,et al.  Simultaneous detection of RNA and DNA targets based on multiplex isothermal amplification. , 2014, Journal of agricultural and food chemistry.

[2]  Yonggang Zhu,et al.  Real-time, continuous detection of maltose using bioluminescence resonance energy transfer (BRET) on a microfluidic system. , 2014, Biosensors & bioelectronics.

[3]  J. Jaiswal,et al.  Potentials and pitfalls of fluorescent quantum dots for biological imaging. , 2004, Trends in cell biology.

[4]  L. You,et al.  High cholesterol diet increases osteoporosis risk via inhibiting bone formation in rats , 2011, Acta Pharmacologica Sinica.

[5]  T. Sakaki,et al.  Influence of royal jelly on mouse hepatic gene expression and safety assessment with a DNA microarray. , 2005, Journal of nutritional science and vitaminology.

[6]  J. Vincken,et al.  Increasing soy isoflavonoid content and diversity by simultaneous malting and challenging by a fungus to modulate estrogenicity. , 2011, Journal of agricultural and food chemistry.

[7]  K. Johnsson,et al.  Photoactivatable and photoconvertible fluorescent probes for protein labeling. , 2010, ACS chemical biology.

[8]  M. Wada,et al.  Screening for beneficial effects of oral intake of sweet corn by DNA microarray analysis. , 2009, Journal of food science.

[9]  M. P. Beaudet,et al.  Possible sources of dye-related signal correlation bias in two-color DNA microarray assays. , 2004, Analytical biochemistry.

[10]  E. Goldys Fluorescence Applications in Biotechnology and Life Sciences , 2009 .

[11]  H. Iwahashi,et al.  Evaluation of toxicity of the mycotoxin citrinin using yeast ORF DNA microarray and Oligo DNA microarray , 2007, BMC Genomics.

[12]  Sicheng Wen,et al.  Cytokine gene expression profiles in human lymphocytes induced by a formula of traditional Chinese medicine, vigconic VI-28. , 2006, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[13]  G R Bright,et al.  Five-parameter fluorescence imaging: wound healing of living Swiss 3T3 cells , 1987, The Journal of cell biology.

[14]  Huan H. Cao,et al.  Development of a single base extension-tag microarray for the detection of pathogenic Vibrio species in seafood , 2011, Applied Microbiology and Biotechnology.

[15]  M. Laassri,et al.  MAPREC assay for quantitation of mutants in a recombinant flavivirus vaccine strain using near-infrared fluorescent dyes. , 2011, Journal of virological methods.

[16]  Yuepu Pu,et al.  Rapid and sensitive suspension array for multiplex detection of organophosphorus pesticides and carbamate pesticides based on silica-hydrogel hybrid microbeads. , 2014, Journal of hazardous materials.

[17]  Sunhee Choi Hexaplex PCR assay and liquid bead array for detection of stacked genetically modified cotton event 281-24-236×3006-210-23 , 2011, Analytical and bioanalytical chemistry.

[18]  Shu Zhu,et al.  Development of a DNA microarray for authentication of ginseng drugs based on 18S rRNA gene sequence. , 2008, Journal of agricultural and food chemistry.

[19]  S. Monecke,et al.  Fast DNA Serotyping and Antimicrobial Resistance Gene Determination of Salmonella enterica with an Oligonucleotide Microarray-Based Assay , 2012, PloS one.

[20]  S. Arai,et al.  Characterization of the quality of imbibed soybean at an early stage of pre-germination for the development of a new protein food item , 2014, Bioscience, biotechnology, and biochemistry.

[21]  Rachel J Errington,et al.  Fluorescence techniques for drug delivery research: theory and practice. , 2005, Advanced drug delivery reviews.

[22]  Yi Zhang,et al.  Quantum Dot Enabled Molecular Sensing and Diagnostics , 2012, Theranostics.

[23]  S. Hill,et al.  The evolving small‐molecule fluorescent‐conjugate toolbox for Class A GPCRs , 2014, British journal of pharmacology.

[24]  S. Kron,et al.  Peptide reporters of kinase activity in whole cell lysates. , 2010, Biopolymers.

[25]  L. Stolker,et al.  Gynaecomastia linked to the intake of a herbal supplement fortified with diethylstilbestrol , 2010, Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment.

[26]  T. Cajthaml,et al.  New in vitro reporter gene bioassays for screening of hormonal active compounds in the environment , 2010, Applied Microbiology and Biotechnology.

[27]  Tudor I. Oprea,et al.  Discovery of selective probes and antagonists for G-protein-coupled receptors FPR/FPRL1 and GPR30. , 2009, Current topics in medicinal chemistry.

[28]  M. Nielen,et al.  Validation of a rapid yeast estrogen bioassay, based on the expression of green fluorescent protein, for the screening of estrogenic activity in calf urine , 2005 .

[29]  Lawrence Lee Rapid Methods for the Detection of Foodborne Bacterial Pathogens: Principles, Applications, Advantages and Limitations. Frontiers in Microbiology. 2015.5:770. doi: 10.3389/fmicb.2014.00770 , 2015 .

[30]  J. Barletta Applications of real-time immuno-polymerase chain reaction (rt-IPCR) for the rapid diagnoses of viral antigens and pathologic proteins. , 2006, Molecular aspects of medicine.

[31]  H. Ulrich,et al.  RNA and DNA Aptamers in Cytomics Analysis , 2005, Current protocols in cytometry.

[32]  Reinhard Niessner,et al.  Sensitive quantification of Escherichia coli O157:H7, Salmonella enterica , and Campylobacter jejuni by combining stopped polymerase chain reaction with chemiluminescence flow-through DNA microarray analysis. , 2011, Analytical chemistry.

[33]  W. D. de Vos,et al.  Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome. , 2013, The Journal of nutrition.

[34]  Huichen Guo,et al.  Lanthanide-doped upconverting phosphors for bioassay and therapy. , 2012, Nanoscale.

[35]  A. Sakudo,et al.  Recent developments in prion disease research: diagnostic tools and in vitro cell culture models. , 2007, The Journal of veterinary medical science.

[36]  M. Beatty,et al.  The application of laser microdissection to in planta gene expression profiling of the maize anthracnose stalk rot fungus Colletotrichum graminicola. , 2006, Molecular plant-microbe interactions : MPMI.

[37]  I. Nabiev,et al.  New directions in quantum dot-based cytometry detection of cancer serum markers and tumor cells. , 2013, Critical reviews in oncology/hematology.

[38]  R. Haugland,et al.  Development and characterization of the NanoOrange protein quantitation assay: a fluorescence-based assay of proteins in solution. , 2003, BioTechniques.

[39]  L. Beutin,et al.  Emerging types of Shiga toxin-producing E. coli (STEC) O178 present in cattle, deer, and humans from Argentina and Germany , 2014, Front. Cell. Infect. Microbiol..

[40]  C. Consolandi,et al.  Olive variety identification by ligation detection reaction in a universal array format. , 2007, Journal of biotechnology.

[41]  E Gratton,et al.  Fluorescence generalized polarization of cell membranes: a two-photon scanning microscopy approach. , 1996, Biophysical journal.

[42]  R G Sweet,et al.  Fluorescence Activated Cell Sorting , 2020, Definitions.

[43]  Chun-yan Zhu,et al.  Genomic study of the absorption mechanism of p-coumaric acid and caffeic acid of extract of Ananas comosus L. leaves. , 2015, Journal of food science.

[44]  P. Gerner-Smidt,et al.  Genomic Characterization of Listeria monocytogenes Strains Involved in a Multistate Listeriosis Outbreak Associated with Cantaloupe in US , 2012, PloS one.

[45]  Y. Egashira,et al.  Gene expression analysis of the liver and skeletal muscle of psyllium-treated mice. , 2013, The British journal of nutrition.

[46]  D. Altschuh,et al.  Fluorescence sensing of intermolecular interactions and development of direct molecular biosensors , 2006, Journal of molecular recognition : JMR.

[47]  Guoyao Wu,et al.  Analysis of nitrite and nitrate in biological samples using high-performance liquid chromatography. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[48]  Liangjun Xu,et al.  A microfluidic chip‐based fluorescent biosensor for the sensitive and specific detection of label‐free single‐base mismatch via magnetic beads‐based “sandwich” hybridization strategy , 2013, Electrophoresis.

[49]  Yutaka Kodama,et al.  Bimolecular fluorescence complementation (BiFC): a 5-year update and future perspectives. , 2012, BioTechniques.

[50]  I. Patel,et al.  Recent Advances in Molecular Technologies and Their Application in Pathogen Detection in Foods with Particular Reference to Yersinia , 2011, Journal of pathogens.

[51]  M. Crowley,et al.  Transcriptome analysis of Listeria monocytogenes grown on a ready-to-eat meat matrix. , 2011, Journal of food protection.

[52]  M. Gu,et al.  A Subtractively Optimized DNA Microarray Using Non-sequenced Genomic Probes for the Detection of Food-Borne Pathogens , 2011, Applied biochemistry and biotechnology.

[53]  G. Migliorati,et al.  Detection and Genotyping of Campylobacter jejuni and Campylobactercoli by Use of DNA Oligonucleotide Arrays , 2013, Molecular Biotechnology.

[54]  G. Kennedy,et al.  Application of High-Density DNA Resequencing Microarray for Detection and Characterization of Botulinum Neurotoxin-Producing Clostridia , 2013, PloS one.

[55]  M. Nielen,et al.  Urine testing for designer steroids by liquid chromatography with androgen bioassay detection and electrospray quadrupole time-of-flight mass spectrometry identification. , 2006, Analytical chemistry.

[56]  V. Romano Spica,et al.  Detection of metazoan species as a public health issue: simple methods for the validation of food safety and quality. , 2005, Biotechnology annual review.

[57]  A. Ream,et al.  Gene Expression Profiling of Listeria monocytogenes Strain F2365 during Growth in Ultrahigh-Temperature-Processed Skim Milk , 2008, Applied and Environmental Microbiology.

[58]  B. Valeur,et al.  Molecular Fluorescence: Principles and Applications , 2001 .

[59]  Nobuyasu Yamaguchi,et al.  Rapid and simple detection of food poisoning bacteria by bead assay with a microfluidic chip-based system. , 2006, Journal of microbiological methods.

[60]  Lei Wang,et al.  A New Oligonucleotide Microarray for Detection of Pathogenic and Non-Pathogenic Legionella spp. , 2014, PloS one.

[61]  C. Stoscheck,et al.  Quantitation of protein. , 1990, Methods in enzymology.

[62]  Brigitte G Dorner,et al.  Simultaneous quantification of five bacterial and plant toxins from complex matrices using a multiplexed fluorescent magnetic suspension assay. , 2009, The Analyst.

[63]  L. Beutin,et al.  blaCTX-M-₁₅-carrying Escherichia coli and Salmonella isolates from livestock and food in Germany. , 2014, The Journal of antimicrobial chemotherapy.

[64]  W. Rabsch,et al.  Clonal dissemination of Salmonella enterica serovar Infantis in Germany. , 2012, Foodborne pathogens and disease.

[65]  P. Mariani,et al.  Potentials and limitations of molecular diagnostic methods in food safety , 2009, Genes & Nutrition.

[66]  Baolin Zhang,et al.  Apoptosis assays for quantifying the bioactivity of anticancer drug products. , 2010, Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy.

[67]  Guilan Wang,et al.  Lanthanide Complex-Based Fluorescence Label for Time-Resolved Fluorescence Bioassay , 2005, Journal of Fluorescence.

[68]  I. Johnson,et al.  The molecular probes handbook : a guide to fluorescent probes and labeling technologies , 2010 .

[69]  Xuncheng Liu,et al.  Transcriptional profiling in cadmium-treated rice seedling roots using suppressive subtractive hybridization. , 2012, Plant physiology and biochemistry : PPB.

[70]  A. Bhunia,et al.  Monitoring Campylobacter in the poultry production chain—from culture to genes and beyond. , 2015, Journal of microbiological methods.

[71]  R. Tsien,et al.  Green Fluorescent Protein issue Reviewing the latest developments in the science of green fluorescent protein , 2009 .

[72]  L. Kricka,et al.  Analytical ancestry: "firsts" in fluorescent labeling of nucleosides, nucleotides, and nucleic acids. , 2009, Clinical chemistry.

[73]  I. Silva-Zolezzi,et al.  Effect of a mixture of bovine milk oligosaccharides, Lactobacillus rhamnosus NCC4007 and long‐chain polyunsaturated fatty acids on catch‐up growth of intra‐uterine growth‐restricted rats , 2014, Acta physiologica.

[74]  M. Nielen,et al.  Validation and application of a robust yeast estrogen bioassay for the screening of estrogenic activity in animal feed , 2006, Food additives and contaminants.

[75]  P. Fratamico,et al.  Differential gene expression of E. coli O157:H7 in ground beef extract compared to tryptic soy broth. , 2011, Journal of food science.

[76]  S. Nakatani,et al.  Safety Evaluation of the Aqueous Extract Kothala Himbutu (Salacia reticulata) Stem in the Hepatic Gene Expression Profile of Normal Mice Using DNA Microarrays , 2008, Bioscience, biotechnology, and biochemistry.

[77]  Rajesh Nayak,et al.  Microarray analysis of virulence gene profiles in Salmonella serovars from food/food animal environment. , 2011, Journal of infection in developing countries.

[78]  Yuki Kashiwa,et al.  Development of Pathological Diagnostics of Human Kidney Cancer by Multiple Staining Using New Fluorescent Fluolid Dyes , 2014, BioMed research international.

[79]  C. Priest Surface patterning of bonded microfluidic channels. , 2010, Biomicrofluidics.

[80]  R. Heim,et al.  Using GFP in FRET-based applications. , 1999, Trends in cell biology.

[81]  J. Grimm,et al.  The chemistry of small-molecule fluorogenic probes. , 2013, Progress in molecular biology and translational science.

[82]  K. Krause,et al.  Detection of reactive oxygen species derived from the family of NOX NADPH oxidases. , 2012, Free radical biology & medicine.

[83]  Zhiqiang Shen,et al.  Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens , 2007, Applied Microbiology and Biotechnology.

[84]  S. Rhee,et al.  Detection of representative enteropathogenic bacteria, Vibrio spp., pathogenic Escherichia coli, Salmonella spp., Shigella spp., and Yersinia enterocolitica, using a virulence factor gene-based oligonucleotide microarray , 2010, The Journal of Microbiology.

[85]  H. Chun,et al.  Chitooligosaccharide ameliorates diet-induced obesity in mice and affects adipose gene expression involved in adipogenesis and inflammation. , 2012, Nutrition research.

[86]  W. Boron,et al.  Using fluorometry and ion-sensitive microelectrodes to study the functional expression of heterologously-expressed ion channels and transporters in Xenopus oocytes. , 2010, Methods.

[87]  Zhaowei Zhang,et al.  Sensitive competitive immunoassay of multiple mycotoxins with non-fouling antigen microarray. , 2013, Biosensors & bioelectronics.

[88]  Thomas Joos,et al.  Protein microarray technology , 2004, Expert review of proteomics.

[89]  M. Severgnini,et al.  Detection of Food Spoilage and Pathogenic Bacteria Based on Ligation Detection Reaction Coupled to Flow-Through Hybridization on Membranes , 2014, BioMed research international.

[90]  Marleen M. Voorhuijzen,et al.  Development of a multiplex DNA-based traceability tool for crop plant materials , 2011, Analytical and Bioanalytical Chemistry.

[91]  Christof Van Poucke,et al.  Detection of anabolic steroids in dietary supplements: the added value of an androgen yeast bioassay in parallel with a liquid chromatography-tandem mass spectrometry screening method. , 2009, Analytica chimica acta.

[92]  Zhiqiang Shen,et al.  High-throughput detection of food-borne pathogenic bacteria using oligonucleotide microarray with quantum dots as fluorescent labels. , 2014, International journal of food microbiology.

[93]  K. Pászty,et al.  Calcium signaling in pluripotent stem cells , 2012, Molecular and Cellular Endocrinology.

[94]  Guangpeng Zhou,et al.  Development of a DNA microarray for detection and identification of Legionella pneumophila and ten other pathogens in drinking water. , 2011, International journal of food microbiology.

[95]  W. Tan,et al.  Using luminescent nanoparticles as staining probes for Affymetrix GeneChips. , 2007, Bioconjugate chemistry.

[96]  V. Lokeshwar,et al.  Urinary bladder tumor markers. , 2006, Urologic oncology.

[97]  L. Bodrossy,et al.  Microbial diagnostic microarray for food‐ and water‐borne pathogens , 2010, Microbial biotechnology.

[98]  Miriam M. Ngundi,et al.  An array biosensor for detection of bacterial and toxic contaminants of foods. , 2006, Methods in molecular biology.

[99]  H. Nojima,et al.  Genopal™: A Novel Hollow Fibre Array for Focused Microarray Analysis , 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.

[100]  V. Vujanovic,et al.  An innovative brilliant blue FCF method for fluorescent staining of fungi and bacteria , 2011, Biotechnic & histochemistry : official publication of the Biological Stain Commission.

[101]  P. Brown,et al.  Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.

[102]  R. Stephan,et al.  Comparison of virulence and antibiotic resistance genes of food poisoning outbreak isolates of Staphylococcus aureus with isolates obtained from bovine mastitis milk and pig carcasses. , 2011, Journal of food protection.

[103]  T. Kerppola,et al.  Design and implementation of bimolecular fluorescence complementation (BiFC) assays for the visualization of protein interactions in living cells , 2006, Nature Protocols.

[104]  Avraham Rasooly,et al.  Food microbial pathogen detection and analysis using DNA microarray technologies. , 2008, Foodborne pathogens and disease.

[105]  Yudong D. He,et al.  Effects of atmospheric ozone on microarray data quality. , 2003, Analytical chemistry.

[106]  C. Consolandi,et al.  Detection of genetically modified soybean using peptide nucleic acids (PNAs) and microarray technology. , 2004, Journal of agricultural and food chemistry.

[107]  D. Vignali Multiplexed particle-based flow cytometric assays. , 2000, Journal of immunological methods.

[108]  Miriam M. Ngundi,et al.  Multiplexed detection of mycotoxins in foods with a regenerable array. , 2006, Journal of food protection.

[109]  J. Davies,et al.  Molecular Biology of the Cell , 1983, Bristol Medico-Chirurgical Journal.

[110]  Gene expression profiling for food safety assessment: examples in potato and maize. , 2010, Regulatory toxicology and pharmacology : RTP.

[111]  Tae-Ho Lee,et al.  Microarray detection of food-borne pathogens using specific probes prepared by comparative genomics. , 2008, Biosensors & bioelectronics.

[112]  Saeko Masumoto,et al.  Dietary quercetin alleviates diabetic symptoms and reduces streptozotocin-induced disturbance of hepatic gene expression in mice. , 2009, Molecular nutrition & food research.

[113]  E. Volpi,et al.  FISH glossary: an overview of the fluorescence in situ hybridization technique. , 2008, BioTechniques.

[114]  M. Takasugi,et al.  Application of Fluolid-Orange-labeled probes for DNA microarray and immunological assays , 2011, Biotechnology Letters.

[115]  Jian-Guo Jiang,et al.  Chinese medicine and its modernization demands. , 2008, Archives of medical research.

[116]  E. Barros,et al.  Oligonucleotide microarray for the identification of potential mycotoxigenic fungi , 2010, BMC Microbiology.

[117]  K. Rudi,et al.  Differentiation of important and closely related cereal plant species (Poaceae) in food by hybridization to an oligonucleotide array. , 2005, Journal of agricultural and food chemistry.

[118]  S. Johler,et al.  Virulence and resistance gene profiles of staphylococcus aureus strains isolated from ready-to-eat foods. , 2014, Journal of food protection.

[119]  Lisa C Shriver-Lake,et al.  Applications of array biosensor for detection of food allergens. , 2004, Journal of AOAC International.

[120]  K. Amoako,et al.  A New Generation Microarray for the Simultaneous Detection and Identification of Yersinia pestis and Bacillus anthracis in Food , 2012, Journal of pathogens.

[121]  V. Kouznetsov,et al.  Antimycobacterial susceptibility testing methods for natural products research , 2010, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].

[122]  P. Somervuo,et al.  Comparative Genomic Hybridization Analysis Shows Different Epidemiology of Chromosomal and Plasmid-Borne cpe-Carrying Clostridium perfringens Type A , 2012, PloS one.

[123]  E D Léonard,et al.  Usefulness and limits of biological dosimetry based on cytogenetic methods. , 2005, Radiation protection dosimetry.

[124]  D. Hincha,et al.  A quality-controlled microarray method for gene expression profiling. , 2005, Analytical biochemistry.

[125]  J. Borlak,et al.  Recent advances in live cell imaging of hepatoma cells , 2014, BMC Cell Biology.

[126]  K. Gruden,et al.  NAIMA: target amplification strategy allowing quantitative on-chip detection of GMOs , 2008, Nucleic acids research.

[127]  John P Nolan,et al.  Suspension array technology: evolution of the flat-array paradigm. , 2002, Trends in biotechnology.

[128]  Kun Xu,et al.  High sensitive immunoassay for multiplex mycotoxin detection with photonic crystal microsphere suspension array. , 2013, Analytical chemistry.

[129]  Jae-hwan Kim,et al.  An event-specific DNA microarray to identify genetically modified organisms in processed foods. , 2010, Journal of agricultural and food chemistry.

[130]  N. Høiby,et al.  Food as a Source for Quorum Sensing Inhibitors: Iberin from Horseradish Revealed as a Quorum Sensing Inhibitor of Pseudomonas aeruginosa , 2012, Applied and Environmental Microbiology.

[131]  J. Khandurina,et al.  Large‐scale carbohydrate analysis by capillary array electrophoresis: Part 2. Data normalization and quantification , 2004, Electrophoresis.

[132]  M. Cornforth,et al.  Strand-specific fluorescence in situ hybridization: the CO-FISH family , 2004, Cytogenetic and Genome Research.

[133]  A. Reverter,et al.  Numerical analysis of intensity signals resulting from genotyping pooled DNA samples in beef cattle and broiler chicken. , 2014, Journal of animal science.

[134]  D. Pope,et al.  Detection of genetically modified canola using multiplex PCR coupled with oligonucleotide microarray hybridization. , 2008, Journal of agricultural and food chemistry.

[135]  Jin Tan,et al.  Discrimination of fresh fruit juices by a fluorescent sensor array for carboxylic acids based on molecularly imprinted titania. , 2014, Food chemistry.

[136]  Liming Xu,et al.  Genotoxicity and molecular response of silver nanoparticle (NP)-based hydrogel , 2012, Journal of Nanobiotechnology.

[137]  E. Tietze,et al.  Molecular epidemiology of Salmonella enterica serovar Kottbus isolated in Germany from humans, food and animals. , 2014, Veterinary microbiology.

[138]  A. Arie,et al.  Magnetic modulation biosensing for rapid and homogeneous detection of biological targets at low concentrations. , 2010, Current pharmaceutical biotechnology.

[139]  I. Abdullahi,et al.  Amplification-free detection of grapevine viruses using an oligonucleotide microarray. , 2011, Journal of virological methods.

[140]  Patrick Philipp,et al.  A Microarray-based Detection System for Genetically Modified (GM) Food Ingredients , 2006, Plant Molecular Biology.

[141]  Miriam M. Ngundi,et al.  Array biosensor for detection of ochratoxin A in cereals and beverages. , 2005, Analytical chemistry.

[142]  Li Jianlin,et al.  Simultaneous detection of ochratoxin A and fumonisin B1 in cereal samples using an aptamer-photonic crystal encoded suspension array. , 2014, Analytical chemistry.

[143]  R. Petersen,et al.  DNA hypomethylation of inflammation-associated genes in adipose tissue of female mice after multigenerational high fat diet feeding , 2014, International Journal of Obesity.

[144]  D. Call,et al.  Detection of Pathogenic Vibrio spp. in Shellfish by Using Multiplex PCR and DNA Microarrays , 2004, Applied and Environmental Microbiology.

[145]  M. Kostrzynska,et al.  Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens. , 2006, Canadian journal of microbiology.

[146]  L. Mátyus,et al.  Application of fluorescence resonance energy transfer in the clinical laboratory: routine and research. , 1998, Cytometry.

[147]  C. Parker,et al.  Detection and Genotyping of Arcobacter and Campylobacter Isolates from Retail Chicken Samples by Use of DNA Oligonucleotide Arrays , 2007, Applied and Environmental Microbiology.

[148]  K. Makino,et al.  Hochuekkito, a Kampo (traditional Japanese herbal) Medicine, Enhances Mucosal IgA Antibody Response in Mice Immunized with Antigen-entrapped Biodegradable Microparticles , 2007, Evidence-based complementary and alternative medicine : eCAM.

[149]  Hongtao Zhang,et al.  Non-invasive, ultra-sensitive, high-throughput assays to quantify rare biomarkers in the blood. , 2008, Methods.

[150]  V. Singer,et al.  RNA quantitation by fluorescence-based solution assay: RiboGreen reagent characterization. , 1998, Analytical biochemistry.

[151]  G. Hanson,et al.  Fluorescent probes for cellular assays. , 2008, Combinatorial chemistry & high throughput screening.

[152]  K. Oda,et al.  Hypoxia-Inducible Genes Encoding Small EF-Hand Proteins in Rice and Tomato , 2010, Bioscience, biotechnology, and biochemistry.

[153]  Hua-Chuan Zheng,et al.  Gene expression profiling of lens tumors, liver and spleen in α-crystallin/SV40 T antigen transgenic mice treated with Juzen-taiho-to. , 2014, Molecular medicine reports.

[154]  J. Stockert,et al.  Uptake and localisation of small-molecule fluorescent probes in living cells: a critical appraisal of QSAR models and a case study concerning probes for DNA and RNA , 2013, Histochemistry and Cell Biology.

[155]  H. Kuiper,et al.  Exploitation of molecular profiling techniques for GM food safety assessment. , 2003, Current opinion in biotechnology.

[156]  J. H. Seo,et al.  Specific multiplex analysis of pathogens using a direct 16S rRNA hybridization in microarray system. , 2012, Analytical chemistry.

[157]  Kei-ichiro Nakamura,et al.  A fluorescence scanning electron microscope. , 2009, Ultramicroscopy.

[158]  Donghai Wu,et al.  Sensitive detection of multiplex toxins using antibody microarray. , 2010, Analytical biochemistry.

[159]  B. Liu,et al.  Development of a DNA Microarray for Molecular Identification of All 46 Salmonella O Serogroups , 2013, Applied and Environmental Microbiology.

[160]  T. Sakurai,et al.  Transcriptome Analysis Using a High-Density Oligomicroarray under Drought Stress in Various Genotypes of Cassava: An Important Tropical Crop , 2012, DNA research : an international journal for rapid publication of reports on genes and genomes.

[161]  E. Gratton,et al.  Two-photon fluorescence microscopy of laurdan generalized polarization domains in model and natural membranes. , 1997, Biophysical journal.

[162]  Igor L. Medintz,et al.  Quantum dot bioconjugates for imaging, labelling and sensing , 2005, Nature materials.

[163]  V. Wendisch,et al.  Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria , 2008, Journal of applied microbiology.

[164]  Dong Soon Lee,et al.  Bio-cell chip fabrication and applications. , 2009, Methods in molecular biology.

[165]  U. Resch-Genger,et al.  Novel calibration tools and validation concepts for microarray-based platforms used in molecular diagnostics and food safety control , 2015, Analytical and Bioanalytical Chemistry.

[166]  A. Lehner,et al.  Outbreak of Staphylococcal food poisoning due to SEA-producing Staphylococcus aureus. , 2013, Foodborne pathogens and disease.

[167]  R. Kiyama,et al.  Estrogenic endocrine disruptors: Molecular mechanisms of action. , 2015, Environment international.

[168]  D. Volokhov,et al.  Application of cell culture enrichment for improving the sensitivity of mycoplasma detection methods based on nucleic acid amplification technology (NAT) , 2007, Applied Microbiology and Biotechnology.

[169]  G. Overesch,et al.  Occurrence and genetic characteristics of third-generation cephalosporin-resistant Escherichia coli in Swiss retail meat. , 2014, Microbial drug resistance.

[170]  Bruce D Hammock,et al.  Photonic crystal lab-on-a-chip for detecting staphylococcal enterotoxin B at low attomolar concentration. , 2013, Analytical chemistry.

[171]  R. Stephan,et al.  Comparison of Staphylococcus aureus isolates associated with food intoxication with isolates from human nasal carriers and human infections , 2012, European Journal of Clinical Microbiology & Infectious Diseases.

[172]  Heribert Insam,et al.  Changes in the microbial communities during co-composting of digestates , 2014, Waste management.

[173]  A. Pühler,et al.  Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization. , 2011, Journal of biotechnology.

[174]  Z. Zhang,et al.  An ultrasensitive immunosensor array for determination of staphylococcal enterotoxin B. , 2011, Talanta.

[175]  Ying Wang,et al.  The Fluorescence Bioassay Platforms on Quantum Dots Nanoparticles , 2005, Journal of Fluorescence.

[176]  Frances S. Ligler,et al.  Array biosensor for detection of toxins , 2003, Analytical and bioanalytical chemistry.

[177]  D. Mok,et al.  T‐cell activation genes differentially expressed at birth in CD4+ T‐cells from children who develop IgE food allergy , 2012, Allergy.

[178]  Roger Y. Tsien,et al.  Crystal Structure of the Aequorea victoria Green Fluorescent Protein , 1996, Science.

[179]  R. Stephan,et al.  Outbreak of staphylococcal food poisoning among children and staff at a Swiss boarding school due to soft cheese made from raw milk. , 2015, Journal of dairy science.

[180]  R. Haugland,et al.  Texas Red, a hydrophilic, red-emitting fluorophore for use with fluorescein in dual parameter flow microfluorometric and fluorescence microscopic studies. , 1982, Journal of immunological methods.

[181]  Wei Zhang,et al.  Multiplex profiling of glycoproteins using a novel bead‐based lectin array , 2014, Proteomics.

[182]  D. Grasso,et al.  Flow cytometry. , 1998, Methods in molecular medicine.

[183]  Hisami Yamanaka-Okumura,et al.  Gene Expression Profiling in Peripheral White Blood Cells in Response to the Intake of Food with Different Glycemic Index Using a DNA Microarray , 2013, Lifestyle Genomics.

[184]  Carlo Leifert,et al.  Transcriptome analysis of potato tubers--effects of different agricultural practices. , 2009, Journal of agricultural and food chemistry.

[185]  Nakorn Niamnont,et al.  Protein discrimination by fluorescent sensor array constituted of variously charged dendritic phenylene-ethynylene fluorophores. , 2010, Biosensors & bioelectronics.

[186]  I. Barkallah,et al.  Prevalence, identification by a DNA microarray-based assay of human and food isolates Listeria spp. from Tunisia. , 2014, Pathologie-biologie.

[187]  Y. Ohba,et al.  Fluorescent protein-based biosensors and their clinical applications. , 2013, Progress in molecular biology and translational science.

[188]  R. Haugland,et al.  Alexa Dyes, a Series of New Fluorescent Dyes that Yield Exceptionally Bright, Photostable Conjugates , 1999, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[189]  Yong‐Jin Pu,et al.  Single Benzene Green Fluorophore: Solid-State Emissive, Water-Soluble, and Solvent- and pH-Independent Fluorescence with Large Stokes Shifts. , 2015, Angewandte Chemie.

[190]  M. Gu,et al.  Detection of Alicyclobacillus species in fruit juice using a random genomic DNA microarray chip. , 2011, Journal of food protection.

[191]  R. Kiyama,et al.  Activation of rapid signaling pathways and the subsequent transcriptional regulation for the proliferation of breast cancer MCF-7 cells by the treatment with an extract of Glycyrrhiza glabra root. , 2007, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[192]  M. Epple,et al.  Synthetic pathways to make nanoparticles fluorescent. , 2011, Nanoscale.

[193]  M. J. Hazen,et al.  The antioxidant butylated hydroxyanisole potentiates the toxic effects of propylparaben in cultured mammalian cells. , 2014, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[194]  Irina S Druzhinina,et al.  Global nutrient profiling by Phenotype MicroArrays: a tool complementing genomic and proteomic studies in conidial fungi , 2010, Journal of Zhejiang University SCIENCE B.

[195]  DNA microarray technology used for studying foodborne pathogens and microbial habitats: minireview. , 2002, Journal of AOAC International.

[196]  Yuichiro Hori,et al.  [Crystal structure of the Aequorea victoria green fluorescent protein]. , 2007, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[197]  S. Terai,et al.  Herbal medicine Inchin-ko-to (TJ-135) prevents liver fibrosis and enzyme-altered lesions in rat liver cirrhosis induced by a choline-deficient L-amino acid-defined diet. , 2003, Journal of hepatology.

[198]  T. Kojima,et al.  Facilitative effects of Eucommia ulmoides on fatty acid oxidation in hypertriglyceridaemic rats. , 2012, Journal of the science of food and agriculture.

[199]  C. Horton,et al.  Single live-cell imaging for systems biology. , 2008, Essays in biochemistry.

[200]  N. Hall,et al.  Exploring the Diversity of Arcobacter butzleri from Cattle in the UK Using MLST and Whole Genome Sequencing , 2013, PloS one.

[201]  W. Rungrassamee,et al.  Development of bacteria identification array to detect lactobacilli in Thai fermented sausage. , 2012, Journal of microbiological methods.

[202]  Hui Gao,et al.  A Bioanalytical Platform for Simultaneous Detection and Quantification of Biological Toxins , 2012, Sensors.

[203]  Nusrat Siddique,et al.  Detection of Yersinia enterocolitica in Alfalfa, Mung Bean, Cilantro, and Mamey Sapote (Pouteria sapota) Food Matrices Using DNA Microarray Chip Hybridization , 2009, Current Microbiology.

[204]  R. Tsien,et al.  Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer , 1996, Current Biology.

[205]  R. Kiyama,et al.  DNA microarray-based gene expression profiling of estrogenic chemicals , 2014, Cellular and Molecular Life Sciences.

[206]  M. Nielen,et al.  6-Plex microsphere immunoassay with imaging planar array detection for mycotoxins in barley. , 2014, The Analyst.

[207]  Tudor I. Oprea,et al.  Flow cytometry for high-throughput, high-content screening. , 2004, Current opinion in chemical biology.

[208]  Sashwati Roy,et al.  DNA microarray technology in nutraceutical and food safety. , 2004, Toxicology letters.

[209]  G. Gibson,et al.  Microarray Analysis , 2020, Definitions.

[210]  Christian Hertel,et al.  DNA microarray based detection of genes involved in safety and technologically relevant properties of food associated coagulase-negative staphylococci. , 2011, International journal of food microbiology.

[211]  W. Rabsch,et al.  Diversity of Salmonella enterica serovar Derby isolated from pig, pork and humans in Germany. , 2011, International journal of food microbiology.

[212]  A. Gehring,et al.  Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens. , 2010, Molecular and cellular probes.

[213]  Sashwati Roy,et al.  cDNA microarray screening in food safety. , 2006, Toxicology.

[214]  Xiangmei Lin,et al.  Development and primary application of a fluorescent liquid bead array for the simultaneous identification of multiple genetically modified maize. , 2013, Biosensors & bioelectronics.

[215]  C. Xue,et al.  Detection of Panax quinquefolius in Panax ginseng using 'subtracted diversity array'. , 2011, Journal of the science of food and agriculture.

[216]  R. Stierum,et al.  Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole. , 2008, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[217]  Y. Le Loir,et al.  Low occurrence of safety hazards in coagulase negative staphylococci isolated from fermented foodstuffs. , 2010, International journal of food microbiology.

[218]  David F. Smith,et al.  Functional Glycomic Analysis of Human Milk Glycans Reveals the Presence of Virus Receptors and Embryonic Stem Cell Biomarkers* , 2012, Journal of Biological Chemistry.

[219]  M. Nielen,et al.  Bioassay based screening of steroid derivatives in animal feed and supplements. , 2011, Analytica chimica acta.

[220]  A. Endimiani,et al.  A novel universal DNA labeling and amplification system for rapid microarray-based detection of 117 antibiotic resistance genes in Gram-positive bacteria. , 2015, Journal of microbiological methods.

[221]  Joyce M. Stroot,et al.  Capture antibody targeted fluorescence in situ hybridization (CAT-FISH): dual labeling allows for increased specificity in complex samples. , 2012, Journal of microbiological methods.

[222]  L. Bagatolli,et al.  To see or not to see: lateral organization of biological membranes and fluorescence microscopy. , 2006, Biochimica et biophysica acta.

[223]  M. Liu,et al.  Recent Progress on Synthesis of Fluorescein Probes , 2009 .

[224]  W. Huh,et al.  Bimolecular Fluorescence Complementation (BiFC) Analysis: Advances and Recent Applications for Genome-Wide Interaction Studies. , 2015, Journal of molecular biology.

[225]  G. Ya. Wiederschain,et al.  The Molecular Probes handbook. A guide to fluorescent probes and labeling technologies , 2011, Biochemistry (Moscow).

[226]  Peter M Lansdorp,et al.  Strand-seq: a unifying tool for studies of chromosome segregation. , 2013, Seminars in cell & developmental biology.

[227]  A. Gasbarrini,et al.  Gene expression profiling of patients with latex and/or vegetable food allergy. , 2012, European review for medical and pharmacological sciences.

[228]  Kok-Gan Chan,et al.  Rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations , 2015, Front. Microbiol..

[229]  Nobuyasu Yamaguchi,et al.  Rapid and Simple Quantification of Bacterial Cells by Using a Microfluidic Device , 2005, Applied and Environmental Microbiology.

[230]  M. Tabrizian,et al.  Enzymatically-generated fluorescent detection in micro-channels with internal magnetic mixing for the development of parallel microfluidic ELISA. , 2006, Lab on a chip.

[231]  Jianghong Rao,et al.  Recent Developments of Biological Reporter Technology for Detecting Gene Expression , 2008, Biotechnology & genetic engineering reviews.

[232]  Sven-Olof Enfors,et al.  Confirmative electric DNA array-based test for food poisoning Bacillus cereus. , 2007, Journal of microbiological methods.

[233]  S. Watabe,et al.  DNA microarray analysis on gene candidates possibly related to tetrodotoxin accumulation in pufferfish. , 2014, Toxicon : official journal of the International Society on Toxinology.

[234]  A. Gehring,et al.  An antibody microarray, in multiwell plate format, for multiplex screening of foodborne pathogenic bacteria and biomolecules , 2008, Analytical and bioanalytical chemistry.

[235]  Sanjay Tyagi,et al.  Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes. , 2006, Clinica chimica acta; international journal of clinical chemistry.

[236]  J. Barrett,et al.  Application of complementary DNA microarray technology to carcinogen identification, toxicology, and drug safety evaluation. , 1999, Cancer research.

[237]  J. Pronk,et al.  Transcriptome-Based Characterization of Interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in Lactose-Grown Chemostat Cocultures , 2013, Applied and Environmental Microbiology.