Mn(2+)-sensing mechanisms of yybP-ykoY orphan riboswitches.
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Ian R. Price | J. Helmann | A. Ke | I. Price | A. Gaballa | F. Ding | John D. Helmann | Ailong Ke | Fang Ding | Ahmed Gaballa
[1] J. Helmann,et al. The global transcriptional response of Bacillus subtilis to manganese involves the MntR, Fur, TnrA and σB regulons , 2003, Molecular microbiology.
[2] X. Zhuang,et al. Correlating Structural Dynamics and Function in Single Ribozyme Molecules , 2002, Science.
[3] S. Altuvia,et al. Changes in transcriptional pausing modify the folding dynamics of the pH-responsive RNA element , 2013, Nucleic acids research.
[4] Chaozu He,et al. A Novel Manganese Efflux System, YebN, Is Required for Virulence by Xanthomonas oryzae pv. oryzae , 2011, PloS one.
[5] J. Helmann,et al. Biosynthesis and functions of bacillithiol, a major low-molecular-weight thiol in Bacilli , 2010, Proceedings of the National Academy of Sciences.
[6] G. Storz,et al. The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element. , 2015, Molecular cell.
[7] Catherine A. Wakeman,et al. Structure and Mechanism of a Metal-Sensing Regulatory RNA , 2007, Cell.
[8] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[9] J. Doudna,et al. Crystallization of RNA and RNA-protein complexes. , 2004, Methods.
[10] R. Grubbs. Intracellular magnesium and magnesium buffering , 2002, Biometals.
[11] A. Serganov,et al. Themes and variations in riboswitch structure and function. , 2014, Biochimica et biophysica acta.
[12] Ronald R. Breaker,et al. Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing , 2013, Nucleic acids research.
[13] K. Weeks,et al. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. , 2007, Journal of the American Chemical Society.
[14] Karissa Y. Sanbonmatsu,et al. The expression platform and the aptamer: cooperativity between Mg2+ and ligand in the SAM-I riboswitch , 2012, Nucleic acids research.
[15] Jeffrey E. Barrick,et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[16] K. Weeks,et al. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution , 2006, Nature Protocols.
[17] R. Breaker. Prospects for riboswitch discovery and analysis. , 2011, Molecular cell.
[18] R. Batey,et al. Single-Molecule Conformational Dynamics of a Biologically Functional Hydroxocobalamin Riboswitch , 2014, Journal of the American Chemical Society.
[19] I. Boneca,et al. A Novel Metal Transporter Mediating Manganese Export (MntX) Regulates the Mn to Fe Intracellular Ratio and Neisseria meningitidis Virulence , 2011, PLoS pathogens.
[20] Thomas R. Schneider,et al. HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs , 2004 .
[21] Eric P. Skaar,et al. The Battle for Iron between Bacterial Pathogens and Their Vertebrate Hosts , 2010, PLoS pathogens.
[22] Dinshaw J. Patel,et al. Fluoride ion encapsulation by Mg2+ and phosphates in a fluoride riboswitch , 2012, Nature.
[23] H. Margalit,et al. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli , 2001, Current Biology.
[24] Kun-Yi Hsin,et al. Mespeus--a database of metal interactions with proteins. , 2014, Methods in molecular biology.
[25] R. Micura,et al. Pseudoknot preorganization of the preQ1 class I riboswitch. , 2012, Journal of the American Chemical Society.
[26] Z. Otwinowski,et al. Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.
[27] Tamar Schlick,et al. Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function , 2012, PLoS Comput. Biol..
[28] Randy J. Read,et al. Acta Crystallographica Section D Biological , 2003 .
[29] George M. Sheldrick,et al. Experimental phasing with SHELXC/D/E: combining chain tracing with density modification , 2010, Acta crystallographica. Section D, Biological crystallography.
[30] Y. Chen,et al. Ribonuclease P catalysis requires Mg2+ coordinated to the pro-RP oxygen of the scissile bond. , 1997, Biochemistry.
[31] P. Stragier,et al. Plasmids for ectopic integration in Bacillus subtilis. , 1996, Gene.
[32] R. Breaker,et al. Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes , 2010, Genome Biology.
[33] T. Henkin,et al. T box RNA decodes both the information content and geometry of tRNA to affect gene expression , 2013, Proceedings of the National Academy of Sciences.
[34] J. Helmann,et al. Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins , 2000, Molecular microbiology.
[35] Anna Marie Pyle,et al. Crystal Structure of a Self-Spliced Group II Intron , 2008, Science.
[36] S. Strobel,et al. Structural Evidence for a Two-Metal-Ion Mechanism of Group I Intron Splicing , 2005, Science.
[37] G. Storz,et al. The Escherichia coli MntR Miniregulon Includes Genes Encoding a Small Protein and an Efflux Pump Required for Manganese Homeostasis , 2011, Journal of bacteriology.
[38] A. Grossman,et al. In Vivo Effects of Sporulation Kinases on Mutant Spo0A Proteins in Bacillus subtilis , 2001, Journal of bacteriology.
[39] M. Fedor,et al. Structure and function of the hairpin ribozyme. , 2000, Journal of molecular biology.
[40] J. Helmann,et al. Functional specialization within the Fur family of metalloregulators , 2007, BioMetals.
[41] D. Lafontaine,et al. A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. , 2007, RNA.
[42] J. Imlay. The Mismetallation of Enzymes during Oxidative Stress* , 2014, The Journal of Biological Chemistry.
[43] J. Helmann. Specificity of Metal Sensing: Iron and Manganese Homeostasis in Bacillus subtilis* , 2014, The Journal of Biological Chemistry.
[44] A. Serganov,et al. A Decade of Riboswitches , 2013, Cell.
[45] Anna Marie Pyle,et al. RCrane: semi-automated RNA model building , 2012, Acta crystallographica. Section D, Biological crystallography.
[46] Grigory S. Filonov,et al. Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution , 2014, Journal of the American Chemical Society.
[47] R. Micura,et al. The dynamic nature of RNA as key to understanding riboswitch mechanisms. , 2011, Accounts of chemical research.
[48] E. Westhof,et al. A pH-responsive riboregulator. , 2009, Genes & development.
[49] R. Breaker,et al. Challenges of ligand identification for riboswitch candidates , 2011, RNA biology.
[50] J. Helmann,et al. Origins of specificity and cross‐talk in metal ion sensing by Bacillus subtilis Fur , 2012, Molecular microbiology.
[51] F. Archibald,et al. Manganese acquisition by Lactobacillus plantarum , 1984, Journal of bacteriology.
[52] A. Ke,et al. Common themes and differences in SAM recognition among SAM riboswitches. , 2014, Biochimica et biophysica acta.
[53] Jeffrey H. Miller. Experiments in molecular genetics , 1972 .
[54] É. Massé,et al. Dual-acting riboswitch control of translation initiation and mRNA decay , 2012, Proceedings of the National Academy of Sciences.