Characterization of WRKY co-regulatory networks in rice and Arabidopsis
暂无分享,去创建一个
Shoshi Kikuchi | Pamela Abbruscato | Piero Morandini | Stefano Berri | Kouji Satoh | Pietro Piffanelli | S. Berri | M. E. Pè | S. Kikuchi | P. Piffanelli | Kouji Satoh | O. Faivre-Rampant | A. C. Brasileiro | P. Abbruscato | Mario Enrico Pè | P. Morandini | Luca Mizzi | Irene Fumasoni | Odile Faivre-Rampant | Ana CM Brasileiro | L. Mizzi | I. Fumasoni
[1] A. Osbourn,et al. Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[2] Detlef Weigel,et al. Comprehensive Interaction Map of the Arabidopsis MADS Box Transcription Factorsw⃞ , 2005, The Plant Cell Online.
[3] Gordon K. Smyth,et al. Use of within-array replicate spots for assessing differential expression in microarray experiments , 2005, Bioinform..
[4] M. Lebrun,et al. Characterization of the model system rice--Magnaporthe for the study of nonhost resistance in cereals. , 2008, The New phytologist.
[5] Danhua Jiang,et al. Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb Repressive Complex 2 Components , 2008, PloS one.
[6] F. Berger,et al. MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[7] C. Ballaré,et al. Convergent Responses to Stress. Solar Ultraviolet-B Radiation and Manduca sexta Herbivory Elicit Overlapping Transcriptional Responses in Field-Grown Plants of Nicotiana longiflora1[w] , 2003, Plant Physiology.
[8] Y. Miao,et al. Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis , 2005, Plant Molecular Biology.
[9] D. Thompson,et al. Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells1[w] , 2005, Plant Physiology.
[10] K. Ramsay,et al. Laser capture microdissection: a novel approach to microanalysis of plant-microbe interactions. , 2006, Molecular plant pathology.
[11] N. Amornsiripanitch,et al. A Genomic Approach to Identify Regulatory Nodes in the Transcriptional Network of Systemic Acquired Resistance in Plants , 2006, PLoS pathogens.
[12] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[13] Jia-Wei Wang,et al. Characterization of GaWRKY1, a Cotton Transcription Factor That Regulates the Sesquiterpene Synthase Gene (+)-δ-Cadinene Synthase-A1 , 2004, Plant Physiology.
[14] Paul J. Rushton,et al. DNase1 footprints suggest the involvement of at least three types of transcription factors in the regulation of α-Amy2/A by gibberellin , 1998, Plant Molecular Biology.
[15] J. Beynon,et al. Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[16] Jing Li,et al. The WRKY family of transcription factors in rice and Arabidopsis and their origins. , 2005, DNA research : an international journal for rapid publication of reports on genes and genomes.
[17] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[18] Stefan de Folter,et al. SEPALLATA3: the 'glue' for MADS box transcription factor complex formation , 2009, Genome Biology.
[19] Zhixiang Chen,et al. Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response , 2004, Plant Molecular Biology.
[20] A. Kaplan,et al. Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. , 2002, The Plant journal : for cell and molecular biology.
[21] I. Somssich,et al. Interaction of elicitor‐induced DNA‐binding proteins with elicitor response elements in the promoters of parsley PR1 genes. , 1996, The EMBO journal.
[22] Chang-Jie Jiang,et al. Rice WRKY45 Plays a Crucial Role in Benzothiadiazole-Inducible Blast Resistance[W][OA] , 2007, The Plant Cell Online.
[23] T. Eulgem,et al. The WRKY superfamily of plant transcription factors. , 2000, Trends in plant science.
[24] Ramesh Raina,et al. Characterizing the stress/defense transcriptome of Arabidopsis , 2003, Genome Biology.
[25] Dan Nettleton,et al. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.) , 2007, The Plant journal : for cell and molecular biology.
[26] P. Pérez-Piñera,et al. Expression and cell localization of brain‐derived neurotrophic factor and TrkB during zebrafish retinal development , 2010, Journal of anatomy.
[27] Chunhong Chen,et al. Physical and Functional Interactions between Pathogen-Induced Arabidopsis WRKY18, WRKY40, and WRKY60 Transcription Factors[W] , 2006, The Plant Cell Online.
[28] H. Saedler,et al. MADS-complexes regulate transcriptome dynamics during pollen maturation , 2007, Genome Biology.
[29] Kiana Toufighi,et al. The Botany Array Resource: E-northerns, Expression Angling, and Promoter Analyses , 2022 .
[30] Imre E Somssich,et al. WRKY transcription factors: from DNA binding towards biological function. , 2004, Current opinion in plant biology.
[31] S. Balzergue,et al. Susceptibility of rice to the blast fungus, Magnaporthe grisea. , 2008, Journal of plant physiology.
[32] P. Rushton,et al. Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of α-Amy2 genes , 1995, Plant Molecular Biology.
[33] S. Ishiguro,et al. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′ upstream regions of genes coding for sporamin and β-amylase from sweet potato , 1994, Molecular and General Genetics MGG.
[34] M. Cho,et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. , 2000, Molecular plant-microbe interactions : MPMI.
[35] D. Smyth,et al. TRANSPARENT TESTA GLABRA2, a Trichome and Seed Coat Development Gene of Arabidopsis, Encodes a WRKY Transcription Factor Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001404. , 2002, The Plant Cell Online.
[36] E. Dubois,et al. Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development. , 2003, Gene.
[37] I. Somssich,et al. The Transcription Factors WRKY11 and WRKY17 Act as Negative Regulators of Basal Resistance in Arabidopsis thaliana[W][OA] , 2006, The Plant Cell Online.
[38] H. Hirt,et al. The MAP kinase substrate MKS1 is a regulator of plant defense responses. , 2005, The EMBO journal.
[39] T. Mengiste,et al. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. , 2006, The Plant journal : for cell and molecular biology.
[40] C. Jansson,et al. A Novel WRKY Transcription Factor, SUSIBA2, Participates in Sugar Signaling in Barley by Binding to the Sugar-Responsive Elements of the iso1 Promoter Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.0145 , 2003, The Plant Cell Online.
[41] J. Kehr,et al. Using array hybridization to monitor gene expression at the single cell level. , 2002, Journal of experimental botany.
[42] Hur-Song Chang,et al. Transcriptional Profiling Reveals Novel Interactions between Wounding, Pathogen, Abiotic Stress, and Hormonal Responses in Arabidopsis1,212 , 2002, Plant Physiology.
[43] Liangjiang Wang,et al. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants , 2005, BMC Evolutionary Biology.
[44] P. Robles,et al. The SEP4 Gene of Arabidopsis thaliana Functions in Floral Organ and Meristem Identity , 2004, Current Biology.
[45] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[46] T. Eulgem,et al. Networks of WRKY transcription factors in defense signaling. , 2007, Current opinion in plant biology.
[47] M. Menges,et al. Comprehensive gene expression atlas for the Arabidopsis MAP kinase signalling pathways. , 2008, The New phytologist.
[48] Christophe Périn,et al. GreenPhylDB: a database for plant comparative genomics , 2007, Nucleic Acids Res..
[49] Peer Bork,et al. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation , 2007, Bioinform..
[50] Juan Zhang,et al. Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants , 2008, Cell Research.
[51] Hak-Seung Ryu,et al. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response , 2006, Plant Cell Reports.
[52] S. Ramachandran,et al. A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. , 2008, Plant & cell physiology.
[53] M. Schmid,et al. Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana , 2003, Science.
[54] T. Eulgem,et al. Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. , 2007, Molecular plant-microbe interactions : MPMI.
[55] Jing Li,et al. The WRKY70 Transcription Factor: A Node of Convergence for Jasmonate-Mediated and Salicylate-Mediated Signals in Plant Defense On-line version contains Web-only data. , 2004, The Plant Cell Online.
[56] Hur-Song Chang,et al. Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses , 2002, The Plant Cell Online.
[57] Imre E Somssich,et al. Members of the Arabidopsis WRKY group III transcription factors are part of different plant defense signaling pathways. , 2003, Molecular plant-microbe interactions : MPMI.
[58] K. Hinderhofer,et al. Identification of a transcription factor specifically expressed at the onset of leaf senescence , 2001, Planta.
[59] B. Fan,et al. Roles of Arabidopsis WRKY3 and WRKY4 Transcription Factors in Plant Responses to Pathogens , 2008, BMC Plant Biology.
[60] H. Sano,et al. Rapid systemic accumulation of transcripts encoding a tobacco WRKY transcription factor upon wounding , 2000, Molecular and General Genetics MGG.
[61] M. Pfaffl,et al. A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.
[62] P. Wittich,et al. Downregulation of ovule-specific MADS box genes from petunia results in maternally controlled defects in seed development. , 1997, The Plant cell.
[63] Zhen Xie,et al. A Rice WRKY Gene Encodes a Transcriptional Repressor of the Gibberellin Signaling Pathway in Aleurone Cells1[w] , 2004, Plant Physiology.
[64] Chunhong Chen,et al. Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression , 2001, The Plant Cell Online.
[65] Koji Goto,et al. Complexes of MADS-box proteins are sufficient to convert leaves into floral organs , 2001, Nature.
[66] R. Mittler,et al. The Combined Effect of Drought Stress and Heat Shock on Gene Expression in Tobacco1 , 2002, Plant Physiology.
[67] T. Eulgem,et al. Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors , 1999, The EMBO journal.
[68] E. Mazzucotelli,et al. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley , 2004, Plant Molecular Biology.
[69] M. Yasuda,et al. Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. , 2007, Biochimica et biophysica acta.
[70] I. Somssich,et al. The Role of WRKY Transcription Factors in Plant Immunity[W] , 2009, Plant Physiology.
[71] Chengcai Chu,et al. OsWRKY71, a rice transcription factor, is involved in rice defense response. , 2007, Journal of plant physiology.
[72] B. Valent,et al. Determination of Host Responses to Magnaporthe grisea on Detached Rice Leaves Using a Spot Inoculation Method. , 2003, Plant disease.
[73] Joachim Kilian,et al. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots , 2008, BMC Genomics.