HO• radicals induce an unexpected high proportion of tandem base lesions refractory to repair by DNA glycosylases

Reaction of HO• radicals with double-stranded calf thymus DNA produces high levels of 8-oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodGuo) and, to a minor extent, 8-oxo-7,8-dihydro-2′-deoxyadenosine (8-oxodAdo). Formation of the hydroxylated purine lesions is explained by addition of HO• to the C8 position of the purine moiety. It has been reported that tandem lesions containing a formylamine residue neighboring 8-oxodGuo could be produced through addition of a transiently generated pyrimidine peroxyl radical onto the C8 of an adjacent purine base. Formation of such tandem lesions accounted for ≈10% of the total 8-oxodGuo. In the present work we show that addition of HO• onto the C8 of purine accounts for only ∼5% of the generated 8-oxodGuo. About 50% of the 8-hydroxylated purine lesions, including 8-oxodGuo and 8-oxodAdo, are involved in tandem damage and are produced by peroxyl addition onto the C8 of a vicinal purine base. In addition, the remaining 45% of the 8-oxodGuo are produced by an electron transfer reaction, providing an explanation for the higher yield of formation of 8-oxodGuo compared to 8-oxodAdo. Interestingly, we show that >40% of the 8-oxodGuo involved in tandem lesions is refractory to excision by DNA glycosylases. Altogether our results demonstrate that, subsequently to a single oxidation event, peroxidation reactions significantly increase the yield of formation of hydroxylated purine modifications, generating a high proportion of tandem lesions partly refractory to base excision repair.

[1]  G. Schuster,et al.  Long-range charge transfer in DNA: transient structural distortions control the distance dependence. , 2000, Accounts of chemical research.

[2]  Peter O'Neill,et al.  8-OxoG retards the activity of the ligase III/XRCC1 complex during the repair of a single-strand break, when present within a clustered DNA damage site. , 2004, DNA repair.

[3]  T. Carell,et al.  DNA Damage and Radical Reactions: Mechanistic Aspects, Formation in Cells and Repair Studies , 2008 .

[4]  E. Seeberg,et al.  Accumulation of premutagenic DNA lesions in mice defective in removal of oxidative base damage. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[5]  ESCODD,et al.  Measurement of DNA oxidation in human cells by chromatographic and enzymic methods , 2003 .

[6]  M. Greenberg,et al.  Evidence for glycosidic bond rotation in a nucleobase peroxyl radical and its effect on tandem lesion formation. , 2004, The Journal of organic chemistry.

[7]  V. O'shea,et al.  Base-excision repair of oxidative DNA damage , 2007, Nature.

[8]  E. Sage,et al.  Interplay between DNA N-glycosylases/AP lyases at multiply damaged sites and biological consequences , 2007, Nucleic acids research.

[9]  S. Sommer,et al.  Evidence that proximal multiple mutations in Big Blue transgenic mice are dependent events. , 2000, Mutation research.

[10]  J. Cadet,et al.  Tandem Base Lesions Are Generated by Hydroxyl Radical within Isolated DNA in Aerated Aqueous Solution , 2000 .

[11]  H C Box,et al.  Free radical-induced double lesions in DNA. , 2001, Free radical biology & medicine.

[12]  J. Cadet,et al.  One-electron oxidation of the guanine moiety of 2'-deoxyguanosine: influence of 8-oxo-7,8-dihydro-2'-deoxyguanosine. , 2003, Journal of the American Chemical Society.

[13]  E. A. Wright,et al.  Effect of Oxygen on the Radiosensitivity of Growing Bone and a Possible Danger in the Use of Oxygen during Radiotherapy , 1955, Nature.

[14]  J. Wallace,et al.  Characterization of radiation-induced damage in d(TpApCpG). , 1990, International journal of radiation biology.

[15]  M. Dizdaroglu,et al.  Effect of single mutations in the OGG1 gene found in human tumors on the substrate specificity of the Ogg1 protein. , 2000, Nucleic acids research.

[16]  J. Cadet,et al.  Singlet Oxygen Induces Oxidation of Cellular DNA* , 2000, The Journal of Biological Chemistry.

[17]  J. Viña,et al.  Are we sure we know how to measure 8-oxo-7,8-dihydroguanine in DNA from human cells? , 2004, Archives of biochemistry and biophysics.

[18]  A. Favier,et al.  Cellular background level of 8-oxo-7,8-dihydro-2'-deoxyguanosine: an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up. , 2002, Carcinogenesis.

[19]  J. Wallace,et al.  Free radical-induced double base lesions. , 1995, Radiation research.

[20]  M. Evans,et al.  DNA repair is responsible for the presence of oxidatively damaged DNA lesions in urine. , 2005, Mutation research.

[21]  T. Lindahl Instability and decay of the primary structure of DNA , 1993, Nature.

[22]  M. Kulesz-Martin,et al.  Analysis of DNA damage at the dinucleoside monophosphate level: application to the formamido lesion. , 1992, Radiation research.

[23]  Jean Cadet,et al.  Oxidation of the sugar moiety of DNA by ionizing radiation or bleomycin could induce the formation of a cluster DNA lesion , 2007, Proceedings of the National Academy of Sciences.

[24]  In Seok Hong,et al.  Characterization and mechanism of formation of tandem lesions in DNA by a nucleobase peroxyl radical. , 2007, Journal of the American Chemical Society.

[25]  J. Cadet,et al.  Formation of Modified DNA Bases in Cells Exposed either to Gamma Radiation or to High-LET Particles1 , 2002, Radiation research.

[26]  J. Cadet,et al.  Isotope dilution high-performance liquid chromatography-electrospray tandem mass spectrometry assay for the measurement of 8-oxo-7,8-dihydro-2'-deoxyguanosine in biological samples. , 1998, Journal of chromatography. B, Biomedical sciences and applications.

[27]  P. Wardman,et al.  Radiation chemistry comes before radiation biology , 2009, International journal of radiation biology.

[28]  P O'Neill,et al.  Excision of 8-oxoguanine within clustered damage by the yeast OGG1 protein. , 2001, Nucleic acids research.

[29]  E. E. Budzinski,et al.  Free radical-induced tandem base damage in DNA oligomers. , 1997, Free radical biology & medicine.

[30]  J. Cadet,et al.  High-performance liquid chromatography--tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA. , 2000, Chemical research in toxicology.

[31]  Jean Cadet,et al.  Effects of duplex stability on charge-transfer efficiency within DNA , 2004 .

[32]  Yuesong Wang,et al.  Efficient formation of the tandem thymine glycol/8-oxo-7,8-dihydroguanine lesion in isolated DNA and the mutagenic and cytotoxic properties of the tandem lesions in Escherichia coli cells. , 2010, Chemical research in toxicology.

[33]  Jean Cadet,et al.  DNA tandem lesions containing 8-oxo-7,8-dihydroguanine and formamido residues arise from intramolecular addition of thymine peroxyl radical to guanine. , 2002, Chemical research in toxicology.

[34]  J. Cadet,et al.  Radiation-induced damage to cellular DNA: measurement and biological role , 2005 .

[35]  Jacqueline K. Barton,et al.  Oxidative DNA damage through long-range electron transfer , 1996, Nature.

[36]  Escodd Comparative analysis of baseline 8-oxo-7,8-dihydroguanine in mammalian cell DNA, by different methods in different laboratories: an approach to consensus. , 2002, Carcinogenesis.

[37]  J. Cadet,et al.  Oxidative damage to DNA: formation, measurement and biochemical features. , 2003, Mutation research.

[38]  B. Van Houten,et al.  Double-strand break formation during nucleotide excision repair of a DNA interstrand cross-link. , 2009, Biochemistry.

[39]  E. Sage,et al.  Processing of a complex multiply damaged DNA site by human cell extracts and purified repair proteins , 2005, Nucleic acids research.

[40]  S. Sommer,et al.  Spontaneous multiple mutations show both proximal spacing consistent with chronocoordinate events and alterations with p53-deficiency. , 2004, Mutation research.

[41]  M. Lomax,et al.  Chemical aspects of clustered DNA damage induction by ionising radiation. , 2002, Radiation protection dosimetry.

[42]  H. Tanooka,et al.  Formation of 8-hydroxyguanine residues in DNA by X-irradiation. , 1984, Gan.

[43]  J. Wallace,et al.  Tandem lesions and other products in X-irradiated DNA oligomers. , 1998, Radiation research.

[44]  V. Bohr,et al.  Kinetics of excision of purine lesions from DNA by Escherichia coli Fpg protein. , 1997, Nucleic acids research.

[45]  J. Wallace,et al.  Radiation chemistry of d(ApCpGpT). , 1995, International journal of radiation biology.

[46]  Maria Dusinska,et al.  Measurement of DNA oxidation in human cells by chromatographic and enzymic methods. , 2003, Free radical biology & medicine.