Systematic siRNA Screen Unmasks NSCLC Growth Dependence by Palmitoyltransferase DHHC5

Protein S-palmitoylation is a widespread and dynamic posttranslational modification that regulates protein–membrane interactions, protein–protein interactions, and protein stability. A large family of palmitoyl acyl transferases, termed the DHHC family due to the presence of a common catalytic motif, catalyzes S-palmitoylation; the role of these enzymes in cancer is largely unexplored. In this study, an RNAi-based screen targeting all 23 members of the DHHC family was conducted to examine the effects on the growth in non–small cell lung cancer (NSCLC). Interestingly, siRNAs directed against DHHC5 broadly inhibited the growth of multiple NSCLC lines but not normal human bronchial epithelial cell (HBEC) lines. Silencing of DHHC5 by lentivirus-mediated expression of DHHC5 shRNAs dramatically reduced in vitro cell proliferation, colony formation, and cell invasion in a subset of cell lines that were examined in further detail. The phenotypes were restored by transfection of a wild-type DHHC5 plasmid but not by a plasmid expressing a catalytically inactive DHHC5. Tumor xenograft formation was severely inhibited by DHHC5 knockdown and rescued by DHHC5 expression, using both a conventional and tetracycline-inducible shRNA. These data indicate that DHHC5 has oncogenic capacity and contributes to tumor formation in NSCLC, thus representing a potential novel therapeutic target. Implications: Inhibitors of DHHC5 enzyme activity may inhibit non–small cell lung cancer growth. Mol Cancer Res; 13(4); 784–94. ©2015 AACR.

[1]  John D. Minna,et al.  Human Lung Epithelial Cells Progressed to Malignancy through Specific Oncogenic Manipulations , 2013, Molecular Cancer Research.

[2]  Brent R. Martin,et al.  A Mechanism Regulating G Protein-coupled Receptor Signaling That Requires Cycles of Protein Palmitoylation and Depalmitoylation* ♦ , 2014, The Journal of Biological Chemistry.

[3]  P. Furet,et al.  Strategies toward the design of novel and selective protein tyrosine kinase inhibitors. , 1999, Pharmacology & therapeutics.

[4]  Stephen W. Eichhorn,et al.  MicroRNA-134 activity in somatostatin interneurons regulates H-Ras localization by repressing the palmitoylation enzyme, DHHC9 , 2013, Proceedings of the National Academy of Sciences.

[5]  B. Druker,et al.  Lessons learned from the development of an abl tyrosine kinase inhibitor for chronic myelogenous leukemia. , 2000, The Journal of clinical investigation.

[6]  K. Lam,et al.  Development of inhibitors for protein tyrosine kinases , 2000, Oncogene.

[7]  G. Sozzi Molecular biology of lung cancer. , 2001, European journal of cancer.

[8]  M. Resh Targeting protein lipidation in disease. , 2012, Trends in molecular medicine.

[9]  Nina Kurrle,et al.  Flotillins in Receptor Tyrosine Kinase Signaling and Cancer , 2014, Cells.

[10]  Khadar M. Abdi,et al.  Ankyrin-G palmitoylation and βII-spectrin binding to phosphoinositide lipids drive lateral membrane assembly , 2014, The Journal of cell biology.

[11]  I. Prior,et al.  Ras palmitoylation is necessary for N-Ras activation and signal propagation in growth factor signalling. , 2013, The Biochemical journal.

[12]  John D. Minna,et al.  Nuclear Receptor Expression Defines a Set of Prognostic Biomarkers for Lung Cancer , 2010, PLoS medicine.

[13]  G. Dy,et al.  Targeted therapies in development for non-small cell lung cancer , 2013, Journal of carcinogenesis.

[14]  S. Zhang,et al.  Upregulation of δ‐catenin is associated with poor prognosis and enhances transcriptional activity through Kaiso in non‐small‐cell lung cancer , 2011, Cancer science.

[15]  R. Deschenes,et al.  Thematic review series: Lipid Posttranslational Modifications. Protein palmitoylation by a family of DHHC protein S-acyltransferases Published, JLR Papers in Press, April 1, 2006. , 2006, Journal of Lipid Research.

[16]  R. Hammer,et al.  DHHC5 Interacts with PDZ Domain 3 of Post-synaptic Density-95 (PSD-95) Protein and Plays a Role in Learning and Memory* , 2010, The Journal of Biological Chemistry.

[17]  Eugen C. Buehler,et al.  C911: A Bench-Level Control for Sequence Specific siRNA Off-Target Effects , 2012, PloS one.

[18]  M. Fukata,et al.  Protein palmitoylation in neuronal development and synaptic plasticity , 2010, Nature Reviews Neuroscience.

[19]  J. Minna,et al.  NCI series of cell lines: An historical perspective , 1996, Journal of cellular biochemistry. Supplement.

[20]  R. Deschenes,et al.  A fluorescence-based assay to monitor autopalmitoylation of zDHHC proteins applicable to high-throughput screening. , 2014, Analytical biochemistry.

[21]  S. Lam,et al.  Genetic alterations defining NSCLC subtypes and their therapeutic implications. , 2013, Lung cancer.

[22]  D. Hilgemann,et al.  Massive palmitoylation-dependent endocytosis during reoxygenation of anoxic cardiac muscle , 2013, eLife.

[23]  Michael Peyton,et al.  Systematic Identification of Molecular Subtype-Selective Vulnerabilities in Non-Small-Cell Lung Cancer , 2013, Cell.

[24]  A. Kihara,et al.  Intracellular localization and tissue-specific distribution of human and yeast DHHC cysteine-rich domain-containing proteins. , 2006, Biochimica et biophysica acta.

[25]  A. Adibekian,et al.  Mechanistic effects of protein palmitoylation and the cellular consequences thereof. , 2014, Chemistry and physics of lipids.

[26]  Benjamin F. Cravatt,et al.  DHHC5 Protein Palmitoylates Flotillin-2 and Is Rapidly Degraded on Induction of Neuronal Differentiation in Cultured Cells* , 2011, The Journal of Biological Chemistry.

[27]  R. Hohl,et al.  Is there a future for prenyltransferase inhibitors in cancer therapy? , 2012, Current opinion in pharmacology.

[28]  Li Ding,et al.  Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers , 2012, Cell.

[29]  Li-Xin Jiang,et al.  Interplay of Palmitoylation and Phosphorylation in the Trafficking and Localization of Phosphodiesterase 10A: Implications for the Treatment of Schizophrenia , 2010, The Journal of Neuroscience.

[30]  Hanno Steen,et al.  Proteome Scale Characterization of Human S-Acylated Proteins in Lipid Raft-enriched and Non-raft Membranes* , 2009, Molecular & Cellular Proteomics.

[31]  J. Greaves,et al.  The intracellular dynamic of protein palmitoylation , 2010, The Journal of cell biology.

[32]  Charles D Smith,et al.  Huntingtin interacting protein 14 is an oncogenic human protein: palmitoyl acyltransferase , 2004, Oncogene.

[33]  R. Deschenes,et al.  DHHC-7 and -21 are palmitoylacyltransferases for sex steroid receptors , 2012, Molecular biology of the cell.

[34]  Yu Sun,et al.  Palmitoylation of δ-catenin by DHHC5 Mediates Activity-Induced Synapse Plasticity , 2014, Nature Neuroscience.

[35]  J. Benítez,et al.  Gene amplification of the transcription factor DP1 and CTNND1 in human lung cancer , 2010, The Journal of pathology.

[36]  Y. Ning,et al.  Activation of a novel palmitoyltransferase ZDHHC14 in acute biphenotypic leukemia and subsets of acute myeloid leukemia , 2011, Leukemia.

[37]  Laura A. Sullivan,et al.  Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling. , 2010, Cancer research.

[38]  J. Greaves,et al.  DHHC palmitoyl transferases: substrate interactions and (patho)physiology. , 2011, Trends in biochemical sciences.

[39]  J. Stamler,et al.  Regulation by S-Nitrosylation of Protein Post-translational Modification* , 2011, The Journal of Biological Chemistry.

[40]  R. Deschenes,et al.  DHHC9 and GCP16 Constitute a Human Protein Fatty Acyltransferase with Specificity for H- and N-Ras* , 2005, Journal of Biological Chemistry.

[41]  Hillel Adesnik,et al.  Identification of PSD-95 Palmitoylating Enzymes , 2004, Neuron.

[42]  P. Jänne,et al.  New targetable oncogenes in non-small-cell lung cancer. , 2013, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[43]  R. Huganir,et al.  Palmitoylation by DHHC5/8 Targets GRIP1 to Dendritic Endosomes to Regulate AMPA-R Trafficking , 2012, Neuron.

[44]  T. Saga,et al.  ZDHHC8 knockdown enhances radiosensitivity and suppresses tumor growth in a mesothelioma mouse model , 2012, Cancer science.

[45]  Brent R. Martin,et al.  Dynamic palmitoylation and the role of DHHC proteins in T cell activation and anergy. , 2011, Advances in immunology.

[46]  Charles D Smith,et al.  DHHC20: a human palmitoyl acyltransferase that causes cellular transformation , 2010, Molecular membrane biology.

[47]  R. Deschenes,et al.  Mutational Analysis of Saccharomyces cerevisiae Erf2 Reveals a Two-step Reaction Mechanism for Protein Palmitoylation by DHHC Enzymes*♦ , 2010, The Journal of Biological Chemistry.

[48]  M. Fukata,et al.  Dynamic protein palmitoylation in cellular signaling. , 2009, Progress in lipid research.

[49]  J. Pollack,et al.  Immortalization of Human Bronchial Epithelial Cells in the Absence of Viral Oncoproteins , 2004, Cancer Research.

[50]  Herbert Waldmann,et al.  Inhibiting the palmitoylation/depalmitoylation cycle selectively reduces the growth of hematopoietic cells expressing oncogenic Nras. , 2012, Blood.