Reverse Engineering Molecular Hypergraphs
暂无分享,去创建一个
T. M. Murali | Christopher L. Poirel | Ahsanur Rahman | Craig Estep | David Badger | T. Murali | Ahsanur Rahman | David Badger | Craig Estep
[1] B. Alberts,et al. The Endoplasmic Reticulum , 2002 .
[2] Emad Ramadan,et al. A hypergraph model for the yeast protein complex network , 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..
[3] Nir Friedman,et al. Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks , 2004, Machine Learning.
[4] D. Pe’er. Bayesian Network Analysis of Signaling Networks: A Primer , 2005, Science's STKE.
[5] M E J Newman,et al. Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[6] T. Ideker,et al. Modeling cellular machinery through biological network comparison , 2006, Nature Biotechnology.
[7] Jianzhi Zhang,et al. Why Do Hubs Tend to Be Essential in Protein Networks? , 2006, PLoS genetics.
[8] Simon Kasif,et al. Biological context networks: a mosaic view of the interactome , 2006, Molecular systems biology.
[9] Zhenjun Hu,et al. Towards zoomable multidimensional maps of the cell , 2007, Nature Biotechnology.
[10] Rainer Spang,et al. Inferring cellular networks – a review , 2007, BMC Bioinformatics.
[11] Blanche Schwappach,et al. The GET Complex Mediates Insertion of Tail-Anchored Proteins into the ER Membrane , 2008, Cell.
[12] Jens Nielsen,et al. Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae , 2009, BMC Systems Biology.
[13] Lenwood S. Heath,et al. Semantics of Multimodal Network Models , 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[14] Matthew A. Hibbs,et al. Exploring the human genome with functional maps. , 2009, Genome research.
[15] Jotun Hein,et al. Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison , 2009, Bioinform..
[16] Mariano J. Alvarez,et al. Genome-wide Identification of Post-translational Modulators of Transcription Factor Activity in Human B-Cells , 2009, Nature Biotechnology.
[17] Kenneth H. Buetow,et al. PID: the Pathway Interaction Database , 2008, Nucleic Acids Res..
[18] G. Hart,et al. Glycosyltransferases and Glycan-processing Enzymes -- Essentials of Glycobiology , 2009 .
[19] Steffen Klamt,et al. Hypergraphs and Cellular Networks , 2009, PLoS Comput. Biol..
[20] Frederick P. Roth,et al. Next generation software for functional trend analysis , 2009, Bioinform..
[21] S. Collins,et al. Comprehensive Characterization of Genes Required for Protein Folding in the Endoplasmic Reticulum , 2009, Science.
[22] Kei-Hoi Cheung,et al. BioPAX – A community standard for pathway data sharing , 2010, Nature Biotechnology.
[23] Richard M. Karp,et al. DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases , 2010, PloS one.
[24] Peter N. Robinson,et al. GOing Bayesian: model-based gene set analysis of genome-scale data , 2010, Nucleic acids research.
[25] D. Koller,et al. Automated identification of pathways from quantitative genetic interaction data , 2010, Molecular systems biology.
[26] Chris Hartman,et al. ODES: an overlapping dense sub-graph algorithm , 2010, Bioinform..
[27] Luay Nakhleh,et al. Properties of metabolic graphs: biological organization or representation artifacts? , 2011, BMC Bioinformatics.
[28] Johannes Hutzler,et al. Functional and genomic analyses of blocked protein O‐mannosylation in baker's yeast , 2011, Molecular microbiology.
[29] Kara Dolinski,et al. The BioGRID Interaction Database: 2011 update , 2010, Nucleic Acids Res..
[30] E. Zotenko,et al. Inferring Physical Protein Contacts from Large-Scale Purification Data of Protein Complexes* , 2011, Molecular & Cellular Proteomics.
[31] Haifeng Li,et al. Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation , 2011, PLoS Comput. Biol..
[32] Trey Ideker,et al. Protein Networks as Logic Functions in Development and Cancer , 2011, PLoS Comput. Biol..
[33] Christie S. Chang,et al. The BioGRID interaction database: 2013 update , 2012, Nucleic Acids Res..