The Kinetics of SARS-CoV-2 Antibody Development Is Associated with Clearance of RNAemia

We showed that persistent SARS-CoV-2 RNAemia is an independent predictor of severe COVID-19. We observed that SARS-CoV-2-targeted antibody maturation, specifically Fc-effector functions rather than neutralization, was strongly linked with the ability to rapidly clear viremia. ABSTRACT Persistent SARS-CoV-2 replication and systemic dissemination are linked to increased COVID-19 disease severity and mortality. However, the precise immune profiles that track with enhanced viral clearance, particularly from systemic RNAemia, remain incompletely defined. To define whether antibody characteristics, specificities, or functions that emerge during natural infection are linked to accelerated containment of viral replication, we examined the relationship of SARS-CoV-2-specific humoral immune evolution in the setting of SARS-CoV-2 plasma RNAemia, which is tightly associated with disease severity and death. On presentation to the emergency department, S-specific IgG3, IgA1, and Fc-γ-receptor (Fcγ R) binding antibodies were all inversely associated with higher baseline plasma RNAemia. Importantly, the rapid development of spike (S) and its subunit (S1/S2/receptor binding domain)-specific IgG, especially FcγR binding activity, were associated with clearance of RNAemia. These results point to a potentially critical and direct role for SARS-CoV-2-specific humoral immune clearance on viral dissemination, persistence, and disease outcome, providing novel insights for the development of more effective therapeutics to resolve COVID-19. IMPORTANCE We showed that persistent SARS-CoV-2 RNAemia is an independent predictor of severe COVID-19. We observed that SARS-CoV-2-targeted antibody maturation, specifically Fc-effector functions rather than neutralization, was strongly linked with the ability to rapidly clear viremia. This highlights the critical role of key humoral features in preventing viral dissemination or accelerating viremia clearance and provides insights for the design of next-generation monoclonal therapeutics. The main key points will be that (i) persistent SARS-CoV-2 plasma RNAemia independently predicts severe COVID-19 and (ii) specific humoral immune functions play a critical role in halting viral dissemination and controlling COVID-19 disease progression.

[1]  A. Casadevall,et al.  Early Outpatient Treatment for Covid-19 with Convalescent Plasma , 2022, The New England journal of medicine.

[2]  M. Landray,et al.  Casirivimab and imdevimab in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial , 2021, medRxiv.

[3]  Peng Wang,et al.  B.1.1.529 escapes the majority of SARS-CoV-2 neutralizing antibodies of diverse epitopes , 2021 .

[4]  S. Hoehl,et al.  Reduced Neutralization of SARS-CoV-2 Omicron Variant by Vaccine Sera and monoclonal antibodies , 2021, medRxiv.

[5]  Megan Cully A tale of two antiviral targets — and the COVID-19 drugs that bind them , 2021, Nature Reviews Drug Discovery.

[6]  Junhua Pan,et al.  Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain , 2021, Science.

[7]  J. Dillner,et al.  Duration of SARS-CoV-2 viremia and its correlation to mortality and inflammatory parameters in patients hospitalized for COVID-19: a cohort study , 2021, Diagnostic Microbiology and Infectious Disease.

[8]  Peter J. Richardson,et al.  Effect of Convalescent Plasma on Organ Support-Free Days in Critically Ill Patients With COVID-19: A Randomized Clinical Trial. , 2021, JAMA.

[9]  R. Baric,et al.  Fc-engineered antibody therapeutics with improved anti-SARS-CoV-2 efficacy , 2021, Nature.

[10]  Kelly A. Fusco,et al.  Convalescent plasma for hospitalized patients with COVID-19: an open-label, randomized controlled trial , 2021, Nature Medicine.

[11]  J. Mascola,et al.  A Monoclonal Antibody for Malaria Prevention. , 2021, The New England journal of medicine.

[12]  Simon C Watkins,et al.  SARS-CoV-2 Viremia is Associated with COVID-19 Severity and Predicts Clinical Outcomes. , 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[13]  L. Stamatatos,et al.  Live imaging of SARS-CoV-2 infection in mice reveals that neutralizing antibodies require Fc function for optimal efficacy , 2021, Immunity.

[14]  M. C. Muenker,et al.  Delayed production of neutralizing antibodies correlates with fatal COVID-19 , 2021, Nature Medicine.

[15]  Paul J. Hoover,et al.  Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions , 2021, Cell Reports Medicine.

[16]  N. Hacohen,et al.  Trajectories of Pulmonary Epithelial and Endothelial Injury Markers in COVID-19 Patients Requiring Respiratory Support at Presentation , 2021, A13. A013 ARDS IN THE TIME OF COVID-19.

[17]  S. Richardson,et al.  Targeting Fc effector function in vaccine design , 2021, Expert opinion on therapeutic targets.

[18]  J. Richards,et al.  Integrated immunovirological profiling validates plasma SARS-CoV-2 RNA as an early predictor of COVID-19 mortality , 2021, medRxiv.

[19]  M. Diamond,et al.  Neutralizing and protective human monoclonal antibodies recognizing the N-terminal domain of the SARS-CoV-2 spike protein , 2021, Cell.

[20]  M. Landray,et al.  Convalescent plasma in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial , 2021, medRxiv.

[21]  N. Hacohen,et al.  SARS-CoV-2 Viremia is Associated with Distinct Proteomic Pathways and Predicts COVID-19 Outcomes , 2021, medRxiv.

[22]  D. Lauffenburger,et al.  Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2 , 2021, JCI insight.

[23]  Michele D. Sobolewski,et al.  Intractable Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case Study , 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[24]  A. Sette,et al.  Adaptive immunity to SARS-CoV-2 and COVID-19 , 2021, Cell.

[25]  in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, , 2021 .

[26]  Samuel M. Brown,et al.  A Neutralizing Monoclonal Antibody for Hospitalized Patients with Covid-19 , 2020, The New England Journal of Medicine.

[27]  John D. Davis,et al.  REGN-COV2, a Neutralizing Antibody Cocktail, in Outpatients with Covid-19 , 2020, The New England journal of medicine.

[28]  Gaurav D. Gaiha,et al.  Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host , 2020, The New England journal of medicine.

[29]  Matthew S. Miller,et al.  Cross-Sectional Evaluation of Humoral Responses against SARS-CoV-2 Spike , 2020, Cell Reports Medicine.

[30]  D. Lauffenburger,et al.  Compromised Humoral Functional Evolution Tracks with SARS-CoV-2 Mortality , 2020, Cell.

[31]  J. Dillner,et al.  SARS-CoV-2 RNA in serum as predictor of severe outcome in COVID-19: a retrospective cohort study. , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[32]  Kelsey K. Finn,et al.  Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19 , 2020, Cell.

[33]  Kira L. Newman,et al.  Distinct Early Serological Signatures Track with SARS-CoV-2 Survival , 2020, Immunity.

[34]  Michael D Healy,et al.  SARS-CoV-2 viral load is associated with increased disease severity and mortality , 2020, Nature Communications.

[35]  Dong Men,et al.  Detectable serum SARS-CoV-2 viral load (RNAaemia) is closely correlated with drastically elevated interleukin 6 (IL-6) level in critically ill COVID-19 patients , 2020, medRxiv.

[36]  Michael Proschan,et al.  A Randomized, Controlled Trial of Ebola Virus Disease Therapeutics. , 2019, The New England journal of medicine.

[37]  G. Alter,et al.  A high-throughput, bead-based, antigen-specific assay to assess the ability of antibodies to induce complement activation☆ , 2019, Journal of immunological methods.

[38]  N. Olchanski,et al.  Palivizumab Prophylaxis for Respiratory Syncytial Virus: Examining the Evidence Around Value , 2018, Open forum infectious diseases.

[39]  Xiliang Wang,et al.  Kinetics of pulmonary immune cells, antibody responses and their correlations with the viral clearance of influenza A fatal infection in mice , 2014, Virology Journal.

[40]  Douglas A. Lauffenburger,et al.  In Vivo Systems Analysis Identifies Spatial and Temporal Aspects of the Modulation of TNF-α–Induced Apoptosis and Proliferation by MAPKs , 2011, Science Signaling.