NMR structure determination of proteins and protein complexes larger than 20 kDa.

Recent advances in multidimensional nuclear magnetic resonance methodology to obtain 1H, 15N and 13C resonance assignments, interproton distance and torsion angle restraints, and restraints that characterize long-range order, coupled with new methods of structure refinement and novel methods for reducing linewidths, have permitted three-dimensional solution structures of single chain proteins in excess of 250 residues and multimeric protein in excess of 40 kDa to be solved. These developments may permit the determination by nuclear magnetic resonance of macromolecular structures up to molecular weights in the 50-60 kDa range, thereby bringing into reach numerous systems of considerable biological interest, including a large variety of protein-protein and protein-nucleic acid complexes.

[1]  G. Marius Clore,et al.  Applications of three- and four-dimensional heteronuclear NMR spectroscopy to protein structure determination , 1991 .

[2]  Ad Bax,et al.  Four-Dimensional 15N-Separated NOESY of Slowly Tumbling Perdeuterated 15N-Enriched Proteins. Application to HIV-1 Nef , 1995 .

[3]  A M Gronenborn,et al.  The solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity. , 1998, Journal of molecular biology.

[4]  L. Kay,et al.  A MULTIDIMENSIONAL NMR EXPERIMENT FOR MEASUREMENT OF THE PROTEIN DIHEDRAL ANGLE PSI BASED ON CROSS-CORRELATED RELAXATION BETWEEN 1HALPHA -13CALPHA D IPOLAR AND 13C' (CARBONYL) CHEMICAL SHIFT ANISOTROPY MECHANISMS , 1997 .

[5]  A. Gronenborn,et al.  High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy. , 1992, Biochemistry.

[6]  G. Marius Clore,et al.  Three- and Four-Dimensional Heteronuclear NMR , 1995 .

[7]  M. Hennig,et al.  Direct measurement of angles between bond vectors in high-resolution NMR. , 1997, Science.

[8]  A M Gronenborn,et al.  Determining the structures of large proteins and protein complexes by NMR. , 1998, Trends in biotechnology.

[9]  A M Gronenborn,et al.  A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information. , 1998, Journal of magnetic resonance.

[10]  M. Wittekind,et al.  Incorporation of 1H/13C/15N-{Ile, Leu, Val} into a Perdeuterated, 15N-Labeled Protein: Potential in Structure Determination of Large Proteins by NMR , 1996 .

[11]  K. Wüthrich NMR of proteins and nucleic acids , 1988 .

[12]  S. Grzesiek,et al.  Two-Dimensional NMR Methods for Determining χ1 Angles of Aromatic Residues in Proteins from Three-Bond JC‘Cγ and JNCγ Couplings , 1997 .

[13]  D. Case,et al.  Three-dimensional solution structure of the reduced form of Escherichia coli thioredoxin determined by nuclear magnetic resonance spectroscopy. , 1990, Biochemistry.

[14]  A. Gronenborn,et al.  Three‐dimensional solution structure of the 44 kDa ectodomain of SIV gp41 , 1998, The EMBO journal.

[15]  Jean M. Severin,et al.  Solution structure of an rRNA methyltransferase (ErmAM) that confers macrolide-lincosamide-streptogramin antibiotic resistance , 1997, Nature Structural Biology.

[16]  A. Gronenborn,et al.  Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases , 1996, Protein science : a publication of the Protein Society.

[17]  G. Marius Clore,et al.  Determining the Magnitude of the Fully Asymmetric Diffusion Tensor from Heteronuclear Relaxation Data in the Absence of Structural Information , 1998 .

[18]  A M Gronenborn,et al.  Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude. , 1998, Journal of magnetic resonance.

[19]  High-resolution three-dimensional structure of reduced recombinant human thioredoxin in solution. , 1992 .

[20]  D. S. Garrett,et al.  Solution structure of the 30 kDa N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR. , 1997, Biochemistry.

[21]  L. Kay,et al.  Global folds of highly deuterated, methyl-protonated proteins by multidimensional NMR. , 1997, Biochemistry.

[22]  A. Bax,et al.  Characterization of magnetically oriented phospholipid micelles for measurement of dipolar couplings in macromolecules , 1998, Journal of biomolecular NMR.

[23]  A M Gronenborn,et al.  1H‐Nmr stereospecific assignments by conformational data‐base searches , 1990, Biopolymers.

[24]  A. Bax,et al.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. , 1997, Science.

[25]  A. Gingras,et al.  Structure of translation factor elF4E bound to m7GDP and interaction with 4E-binding protein , 1997, Nature Structural Biology.

[26]  A. Gronenborn,et al.  Solution structure of the cellular factor BAF responsible for protecting retroviral DNA from autointegration , 1998, Nature Structural Biology.

[27]  R. Boelens,et al.  The solution structure of serine protease PB92 from Bacillus alcalophilus presents a rigid fold with a flexible substrate-binding site. , 1997, Structure.

[28]  Lin Yuan,et al.  What is the solution? , 1984, Nature.

[29]  G. Marius Clore,et al.  Determination of Three-Bond1H3′–31P Couplings in Nucleic Acids and Protein–Nucleic Acid Complexes by QuantitativeJCorrelation Spectroscopy , 1998 .

[30]  A. Gronenborn,et al.  Solution structure of cyanovirin-N, a potent HIV-inactivating protein , 1998, Nature Structural Biology.

[31]  Ad Bax,et al.  Methodological advances in protein NMR , 1993 .

[32]  Paul A. Keifer,et al.  Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity , 1992 .

[33]  Ad Bax,et al.  Measurement of Three-Bond 13C−13C J Couplings between Carbonyl and Carbonyl/Carboxyl Carbons in Isotopically Enriched Proteins , 1996 .

[34]  A M Gronenborn,et al.  New methods of structure refinement for macromolecular structure determination by NMR. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[35]  Werner Braun,et al.  Automated stereospecific 1H NMR assignments and their impact on the precision of protein structure determinations in solution , 1989 .

[36]  A. Bax,et al.  χ1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNCγ couplings in isotopically enriched proteins , 1997 .

[37]  A M Gronenborn,et al.  Determination of three-dimensional structures of proteins in solution by nuclear magnetic resonance spectroscopy. , 1987, Protein engineering.

[38]  A. Bax,et al.  Optimized recording of heteronuclear multidimensional NMR spectra using pulsed field gradients , 1992 .

[39]  A. Gronenborn,et al.  Measurement of Residual Dipolar Couplings of Macromolecules Aligned in the Nematic Phase of a Colloidal Suspension of Rod-Shaped Viruses , 1998 .

[40]  A. Gronenborn,et al.  Determination of three-bond 1H3'-31P couplings in nucleic acids and protein-nucleic acid complexes by quantitative J correlation spectroscopy. , 1998, Journal of magnetic resonance.

[41]  R. Riek,et al.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[42]  S. Grzesiek,et al.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation. , 1994, Methods in enzymology.

[43]  A. Gronenborn,et al.  High-resolution three-dimensional structure of reduced recombinant human thioredoxin in solution. , 1992, Biochemistry.

[44]  A. Gronenborn,et al.  The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors. , 1998, Journal of molecular biology.

[45]  E. Zuiderweg,et al.  Use of13C-13C NOE for the assignment of NMR lines of larger labeled proteins at larger magnetic fields , 1996 .

[46]  S. Fesik,et al.  Heteronuclear three-dimensional NMR spectroscopy of isotopically labelled biological macromolecules , 1990, Quarterly Reviews of Biophysics.

[47]  Ad Bax,et al.  An Empirical Correlation between Amide Deuterium Isotope Effects on 13Cα Chemical Shifts and Protein Backbone Conformation , 1997 .

[48]  D. S. Garrett,et al.  Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropy , 1997, Nature Structural Biology.

[49]  A M Gronenborn,et al.  Improvements and extensions in the conformational database potential for the refinement of NMR and X-ray structures of proteins and nucleic acids. , 1997, Journal of magnetic resonance.

[50]  A. Palmer,et al.  Probing molecular motion by NMR. , 1997, Current opinion in structural biology.

[51]  A M Gronenborn,et al.  Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy. , 1991, Science.

[52]  R. R. Ernst,et al.  Correlation of connected transitions by two‐dimensional NMR spectroscopy , 1986 .

[53]  G. Marius Clore,et al.  Use of dipolar 1H–15N and 1H–13C couplings in the structure determination of magnetically oriented macromolecules in solution , 1997, Nature Structural Biology.

[54]  Bennett T. Farmer,et al.  Use of 1HN-1HN NOEs to Determine Protein Global Folds in Perdeuterated Proteins , 1995 .