Integrating imaging-based classification and transcriptomics for quality assessment of human oocytes according to their reproductive efficiency

[1]  H. Heyn,et al.  Single human oocyte transcriptome analysis reveals distinct maturation stage‐dependent pathways impacted by age , 2021, Aging cell.

[2]  P. Szabó,et al.  Maternal DOT1L is dispensable for mouse development , 2020, Scientific Reports.

[3]  J. Mar,et al.  Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation , 2020, PloS one.

[4]  A. Chavez-Badiola,et al.  Embryo Ranking Intelligent Classification Algorithm (ERICA): artificial intelligence clinical assistant predicting embryo ploidy and implantation. , 2020, Reproductive biomedicine online.

[5]  G. Lin,et al.  The mitochondrial DNA copy number of cumulus granulosa cells may be related to the maturity of oocyte cytoplasm. , 2020, Human reproduction.

[6]  M VerMilyea,et al.  Development of an artificial intelligence-based assessment model for prediction of embryo viability using static images captured by optical light microscopy during IVF , 2020, Human reproduction.

[7]  G. Thomas,et al.  The Multifunctional Protein PACS-1 is Required for HDAC2 and HDAC3 Dependent Chromatin Maturation and Genomic Stability , 2020, Oncogene.

[8]  M. Kragh,et al.  Automatic grading of human blastocysts from time-lapse imaging , 2019, Comput. Biol. Medicine.

[9]  A. Pellicer,et al.  Single-cell RNA sequencing of oocytes from ovarian endometriosis patients reveals a differential transcriptomic profile associated with lower quality. , 2019, Human reproduction.

[10]  P. Serhal,et al.  Euploid blastocysts implant irrespective of their morphology after NGS-(PGT-A) testing in advanced maternal age patients , 2019, Journal of Assisted Reproduction and Genetics.

[11]  Ehsan Kazemi,et al.  Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization , 2019, npj Digital Medicine.

[12]  Daniel J. Blankenberg,et al.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update , 2018, Nucleic Acids Res..

[13]  M. Conti,et al.  Acquisition of oocyte competence to develop as an embryo: integrated nuclear and cytoplasmic events , 2018, Human reproduction update.

[14]  J. Bogstad,et al.  Effect of women’s age on embryo morphology, cleavage rate and competence—A multicenter cohort study , 2017, PloS one.

[15]  Elisa Ficarra,et al.  Mining textural knowledge in biological images: Applications, methods and trends , 2016, Computational and structural biotechnology journal.

[16]  R. Hart,et al.  Structural and morphologic differences in human oocytes after in vitro maturation compared with standard in vitro fertilization. , 2016, Fertility and sterility.

[17]  M. Takagi,et al.  Perichromosomal protein Ki67 supports mitotic chromosome architecture , 2016, Genes to cells : devoted to molecular & cellular mechanisms.

[18]  Anthony A. Hyman,et al.  Ki-67 acts as a biological surfactant to disperse mitotic chromosomes , 2016, Nature.

[19]  C. Ponting,et al.  Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery , 2014, eLife.

[20]  Ning Wang,et al.  Behaviour of cytoplasmic organelles and cytoskeleton during oocyte maturation. , 2014, Reproductive biomedicine online.

[21]  G. Smyth,et al.  voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.

[22]  Steven N. Hart,et al.  Calculating Sample Size Estimates for RNA Sequencing Data , 2013, J. Comput. Biol..

[23]  S. Keeney,et al.  Dynamics of DOT1L localization and H3K79 methylation during meiotic prophase I in mouse spermatocytes , 2013, Chromosoma.

[24]  R. Schultz,et al.  Histone Deacetylase 2 (HDAC2) Regulates Chromosome Segregation and Kinetochore Function via H4K16 Deacetylation during Oocyte Maturation in Mouse , 2013, PLoS genetics.

[25]  S. Kalujnaia,et al.  Cloning, tissue distribution and sub-cellular localisation of phospholipase C X-domain containing protein (PLCXD) isoforms. , 2012, Biochemical and biophysical research communications.

[26]  M. Meseguer,et al.  The use of morphokinetics as a predictor of embryo implantation. , 2011, Human reproduction.

[27]  A. Thornhill,et al.  The Istanbul consensus workshop on embryo assessment: proceedings of an expert meeting. , 2011, Human reproduction.

[28]  C. Combelles,et al.  Aberrant spindle structures responsible for recurrent human metaphase I oocyte arrest with attempts to induce meiosis artificially. , 2011, Human reproduction.

[29]  Matthew D. Young,et al.  Gene ontology analysis for RNA-seq: accounting for selection bias , 2010, Genome Biology.

[30]  F. Cendes,et al.  Texture analysis of medical images. , 2004, Clinical radiology.

[31]  J. Gerdes,et al.  Expression of the proliferation marker Ki-67 during early mouse development , 2004, Cytogenetic and Genome Research.

[32]  Qiang Ji,et al.  Texture analysis for classification of cervix lesions , 2000, IEEE Transactions on Medical Imaging.

[33]  P. Tofts,et al.  Texture analysis of spinal cord pathology in multiple sclerosis , 1999, Magnetic resonance in medicine.

[34]  E. Kaplan,et al.  Effect of Calcium on RNA and Protein Synthesis in the Hypertrophied Myocardium , 1976, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.

[35]  P. Ho Member of Editorial Board, Journal of Assisted Reproduction and Genetics , 2006 .