Ecosystem-specific selection pressures revealed through comparative population genomics
暂无分享,去创建一个
[1] J. Hacker,et al. Ecological fitness, genomic islands and bacterial pathogenicity , 2001, EMBO reports.
[2] J. Cotner,et al. Phosphorus-limited bacterioplankton growth in the Sargasso Sea , 1997 .
[3] F. James Rohlf,et al. Biometry: The Principles and Practice of Statistics in Biological Research , 1969 .
[4] S. Chisholm,et al. Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. , 2009, Environmental microbiology.
[5] Nicholas R. Bates,et al. Building the Long-Term Picture: The U.S. JGOFS Time-Series Programs , 2001 .
[6] Scott A Givan,et al. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data , 2007, Biology Direct.
[7] Stefanie Hartmann,et al. Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? , 2008, BMC Evolutionary Biology.
[8] S. Giovannoni,et al. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea , 2009, The ISME Journal.
[9] Robert Belshaw,et al. BlastAlign: a program that uses blast to align problematic nucleotide sequences , 2005, Bioinform..
[10] R. Hood,et al. Phosphorus deficiency in the Atlantic: An emerging paradigm in oceanography , 2003 .
[11] Paul Wilmes,et al. The dynamic genetic repertoire of microbial communities , 2009, FEMS microbiology reviews.
[12] S. Chisholm,et al. Prochlorococcus Ecotype Abundances in the North Atlantic Ocean As Revealed by an Improved Quantitative PCR Method , 2006, Applied and Environmental Microbiology.
[13] A. Halpern,et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.
[14] Rob Knight,et al. UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context , 2006, BMC Bioinformatics.
[15] Lisa R. Moore,et al. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes , 1998, Nature.
[16] A. Mills,et al. Manual of environmental microbiology. , 2007 .
[17] L. Cutter,et al. Behavior of dissolved antimony, arsenic, and selenium in the Atlantic Ocean , 1995 .
[18] N. Moran,et al. Deletional bias and the evolution of bacterial genomes. , 2001, Trends in genetics : TIG.
[19] B. Fuchs,et al. Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre. , 2007, Environmental microbiology.
[20] F. Rodríguez-Valera,et al. Genomic plasticity in prokaryotes: the case of the square haloarchaeon , 2007, The ISME Journal.
[21] Nicholas R. Bates,et al. Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry , 2001 .
[22] J. Lawrence,et al. Protozoan predation, diversifying selection, and the evolution of antigenic diversity in Salmonella. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[23] William A. Siebold,et al. SAR11 clade dominates ocean surface bacterioplankton communities , 2002, Nature.
[24] Sokal Rr,et al. Biometry: the principles and practice of statistics in biological research 2nd edition. , 1981 .
[25] E. Boyle,et al. Phosphate depletion in the western North Atlantic Ocean. , 2000, Science.
[26] Maureen L. Coleman,et al. Genomic Islands and the Ecology and Evolution of Prochlorococcus , 2006, Science.
[27] D. M. Power. Biometry. The Principles and Practice of Statistics in Biological Research; Statistical Tables , 1970 .
[28] Lisa R. Moore,et al. Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity , 2009, Nature.
[29] Vincent J. Denef,et al. Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation , 2008, PLoS biology.
[30] Purificación López-García,et al. Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat , 2007, PloS one.
[31] Stephen H. Bryant,et al. CD-Search: protein domain annotations on the fly , 2004, Nucleic Acids Res..
[32] F. Cohan. Towards a conceptual and operational union of bacterial systematics, ecology, and evolution , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[33] Maureen L. Coleman,et al. Microbial community gene expression in ocean surface waters , 2008, Proceedings of the National Academy of Sciences.
[34] J. Lawrence,et al. Genome evolution in bacteria: order beneath chaos. , 2005, Current opinion in microbiology.
[35] E. Delong,et al. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. , 2010, Environmental microbiology.
[36] Sallie W. Chisholm,et al. Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea , 2001 .
[37] N. Mahowald,et al. Global Iron Connections Between Desert Dust, Ocean Biogeochemistry, and Climate , 2005, Science.
[38] D. Karl. Microbial oceanography: paradigms, processes and promise , 2007, Nature Reviews Microbiology.
[39] Feng Chen,et al. Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus , 2007, PLoS genetics.
[40] D. Gevers,et al. Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton , 2008, Science.
[41] S. Chisholm,et al. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans , 2010, The ISME Journal.
[42] F. Blattner,et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[43] D. Karl,et al. Phosphorus dynamics in the North Pacific subtropical gyre , 2000 .
[44] J. G. Sanders,et al. The uptake and reduction of arsenic species by marine algae , 1980 .
[45] H. Ochman,et al. The fate of new bacterial genes. , 2009, FEMS microbiology reviews.
[46] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[47] Weizhong Li,et al. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. , 2009, Environmental microbiology.
[48] K. Konstantinidis,et al. Genomic insights that advance the species definition for prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[49] J. Pierce. MANUAL OF ENVIRONMENTAL MICROBIOLOGY, 3RD EDITION , 2008 .
[50] Jillian F Banfield,et al. Population genomics in natural microbial communities. , 2006, Trends in ecology & evolution.
[51] D. Scanlan,et al. Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. , 1999, Applied and environmental microbiology.
[52] Maureen L. Coleman,et al. Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation , 2006, Proceedings of the National Academy of Sciences.
[53] N. Goldenfeld,et al. How the Microbial World Saved Evolution from the Scylla of Molecular Biology and the Charybdis of the Modern Synthesis , 2009, Microbiology and Molecular Biology Reviews.