Nucleic acid amplification tests in the diagnosis of tuberculous pleuritis: a systematic review and meta-analysis

BackgroundConventional tests for tuberculous pleuritis have several limitations. A variety of new, rapid tests such as nucleic acid amplification tests – including polymerase chain reaction – have been evaluated in recent times. We conducted a systematic review to determine the accuracy of nucleic acid amplification (NAA) tests in the diagnosis of tuberculous pleuritis.MethodsA systematic review and meta-analysis of 38 English and Spanish articles (with 40 studies), identified via searches of six electronic databases, hand searching of selected journals, and contact with authors, experts, and test manufacturers. Sensitivity, specificity, and other measures of accuracy were pooled using random effects models. Summary receiver operating characteristic curves were used to summarize overall test performance. Heterogeneity in study results was formally explored using subgroup analyses.ResultsOf the 40 studies included, 26 used in-house ("home-brew") tests, and 14 used commercial tests. Commercial tests had a low overall sensitivity (0.62; 95% confidence interval [CI] 0.43, 0.77), and high specificity (0.98; 95% CI 0.96, 0.98). The positive and negative likelihood ratios for commercial tests were 25.4 (95% CI 16.2, 40.0) and 0.40 (95% CI 0.24, 0.67), respectively. All commercial tests had consistently high specificity estimates; the sensitivity estimates, however, were heterogeneous across studies. With the in-house tests, both sensitivity and specificity estimates were significantly heterogeneous. Clinically meaningful summary estimates could not be determined for in-house tests.ConclusionsOur results suggest that commercial NAA tests may have a potential role in confirming (ruling in) tuberculous pleuritis. However, these tests have low and variable sensitivity and, therefore, may not be useful in excluding (ruling out) the disease. NAA test results, therefore, cannot replace conventional tests; they need to be interpreted in parallel with clinical findings and results of conventional tests. The accuracy of in-house nucleic acid amplification tests is poorly defined because of heterogeneity in study results. The clinical applicability of in-house NAA tests remains unclear.

[1]  L E Moses,et al.  Estimating Diagnostic Accuracy from Multiple Conflicting Reports , 1993, Medical decision making : an international journal of the Society for Medical Decision Making.

[2]  D. Enarson,et al.  Tuberculous pleurisy. , 1982, Canadian Medical Association journal.

[3]  N. Saravia,et al.  Evaluation of polymerase chain reaction, adenosine deaminase, and interferon-gamma in pleural fluid for the differential diagnosis of pleural tuberculosis. , 2000, Chest.

[4]  M. Kaku,et al.  Nested polymerase chain reaction for detection of Mycobacterium tuberculosis in clinical samples , 1993, Journal of clinical microbiology.

[5]  P. Kvale,et al.  Incidence of Tuberculosis in the United States among HIV-Infected Persons , 1997, Annals of Internal Medicine.

[6]  A. Hance,et al.  Detection of mycobacterial DNA in pleural fluid from patients with tuberculous pleurisy by means of the polymerase chain reaction: comparison of two protocols. , 1992, Thorax.

[7]  M. Sogin,et al.  Direct detection of Mycobacterium tuberculosis in clinical specimens by DNA amplification , 1990, Journal of clinical microbiology.

[8]  John M Colford,et al.  Diagnostic accuracy of nucleic acid amplification tests for tuberculous meningitis: a systematic review and meta-analysis. , 2003, The Lancet. Infectious diseases.

[9]  E. Palenque,et al.  Polymerase chain reaction for the diagnosis of pleural tuberculosis in immunocompromised and immunocompetent patients. , 1998, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[10]  U. Reischl,et al.  Clinical Evaluation of the Automated COBAS AMPLICOR MTB Assay for Testing Respiratory and Nonrespiratory Specimens , 1998, Journal of Clinical Microbiology.

[11]  S. Greco,et al.  Adenosine deaminase and interferon gamma measurements for the diagnosis of tuberculous pleurisy: a meta-analysis. , 2003, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[12]  V. Lulitanond,et al.  Rapid diagnosis of tuberculous pleural effusion using polymerase chain reaction. , 2000, The Southeast Asian journal of tropical medicine and public health.

[13]  E. Larbi,et al.  Pattern of pleural effusion in Eastern Province of Saudi Arabia: a prospective study. , 1994, East African medical journal.

[14]  C. Hernández,et al.  Utilidad de una técnica de amplificación genética (LCx® MTB) para el diagnóstico de tuberculosis: resultados preliminares con muestras diferentes al esputo , 1999 .

[15]  P. Cardona,et al.  Direct detection of Mycobacterium tuberculosis complex in nonrespiratory specimens by Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test , 1997, Journal of Clinical Microbiology.

[16]  Rafael Laniado-Laborín,et al.  DiagnÛstico de tuberculosis mediante detecciÛn de Mycobacterium tuberculosis empleando un sistema no comercial de reacciÛn en cadena de la polimerasa , 2001 .

[17]  L. Valdés,et al.  Diagnosis of tuberculous pleurisy using the biologic parameters adenosine deaminase, lysozyme, and interferon gamma. , 1993, Chest.

[18]  N. Schluger,et al.  Rapid Diagnostic Tests for Tuberculosis What is the-Appropria te Use? , 1997 .

[19]  P. Bossuyt,et al.  Empirical evidence of design-related bias in studies of diagnostic tests. , 1999, JAMA.

[20]  L. Valdés,et al.  The etiology of pleural effusions in an area with high incidence of tuberculosis. , 1996, Chest.

[21]  R. Light Pleural diseases. , 1992, Disease-a-month : DM.

[22]  G. Maartens,et al.  A comparative study of the polymerase chain reaction and conventional procedures for the diagnosis of tuberculous pleural effusion. , 1992, Tubercle and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[23]  J André Knottnerus,et al.  Evaluation of diagnostic procedures , 2002, BMJ : British Medical Journal.

[24]  W. Tan,et al.  Comparative usefulness of PCR in the detection of Mycobacterium tuberculosis in different clinical specimens. , 1997, Journal of medical microbiology.

[25]  M. Hirata,et al.  Evaluation of Henes‐PCR assay for Mycobacterium detection in different clinical specimens from patients with or without tuberculosis‐associated HIV infection , 2000, Journal of clinical laboratory analysis.

[26]  L. Schouls,et al.  Sequence capture-PCR improves detection of mycobacterial DNA in clinical specimens , 1996, Journal of clinical microbiology.

[27]  A. Panduro,et al.  Rapid and efficient detection of extra-pulmonary Mycobacterium tuberculosis by PCR analysis. , 2000, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[28]  F. Vlaspolder,et al.  Diagnostic value of an amplification method (Gen-Probe) compared with that of culture for diagnosis of tuberculosis , 1995, Journal of clinical microbiology.

[29]  J. Rodríguez,et al.  Comparison of the Ligase Chain Reaction with Solid and Liquid Culture Media for Routine Detection of Mycobacterium tuberculosis in Nonrespiratory Specimens , 1998, European Journal of Clinical Microbiology and Infectious Diseases.

[30]  C. Chang,et al.  Detection and identification of Mycobacterium tuberculosis by DNA amplification , 1990, Journal of clinical microbiology.

[31]  K. Therese,et al.  Polymerase chain reaction using IS6110 primer to detect Mycobacterium tuberculosis in clinical samples. , 2000, Indian journal of pathology & microbiology.

[32]  K. M. Mathews,et al.  Epidemiology of extrapulmonary tuberculosis. A comparative analysis with pre-AIDS era. , 1991, Chest.

[33]  R. D'amato,et al.  Rapid diagnosis of tuberculosis in various biopsy and body fluid specimens by the AMPLICOR Mycobacterium tuberculosis polymerase chain reaction test. , 1998, Chest.

[34]  G. Pfyffer,et al.  Diagnostic performance of amplified Mycobacterium tuberculosis direct test with cerebrospinal fluid, other nonrespiratory, and respiratory specimens , 1996, Journal of clinical microbiology.

[35]  J. Bass,et al.  Tuberculous pleural effusion : twenty-year experience , 1991 .

[36]  C. Escudero Bueno,et al.  Cytologic and bacteriologic analysis of fluid and pleural biopsy specimens with Cope's needle. Study of 414 patients. , 1990, Archives of internal medicine.

[37]  J. T. Crawford,et al.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology , 1993, Journal of clinical microbiology.

[38]  S. Sahn,et al.  Tuberculous pleurisy is more common in AIDS than in non-AIDS patients with tuberculosis. , 1997, Chest.

[39]  Fernando Artiles,et al.  Valoración clínica de la prueba Amplified Mycobacterium tuberculosis Direct 2 (AMTD-2, GenProbe) en el diagnóstico rápido de la tuberculosis , 2001 .

[40]  T. Murakami,et al.  Diagnostic Significance of Interferon-γ in Tuberculous Pleural Effusions , 2003 .

[41]  S. Narayanan,et al.  Utility of polymerase chain reaction using two probes for rapid diagnosis of tubercular pleuritis in comparison to conventional methods. , 2000, The Indian journal of medical research.

[42]  William C Miller,et al.  Assessment by Meta-Analysis of PCR for Diagnosis of Smear-Negative Pulmonary Tuberculosis , 2003, Journal of Clinical Microbiology.

[43]  R. D'amato,et al.  Application of the Roche Amplicor Mycobacterium tuberculosis (PCR) test to specimens other than respiratory secretions. , 1996, Diagnostic microbiology and infectious disease.

[44]  A. Kolk,et al.  Reliability of nucleic acid amplification for detection of Mycobacterium tuberculosis: an international collaborative quality control study among 30 laboratories , 1996, Journal of clinical microbiology.

[45]  P. Cardona,et al.  Direct detection of Mycobacterium tuberculosis complex in nonrespiratory specimens by Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test , 1997 .

[46]  L. Ward,et al.  Nested-PCR using MPB64 fragment improves the diagnosis of pleural and meningeal tuberculosis. , 2000, Revista da Sociedade Brasileira de Medicina Tropical.

[47]  V. Valtonen,et al.  LCx Mycobacterium tuberculosis assay is valuable with respiratory specimens, but provides little help in the diagnosis of extrapulmonary tuberculosis , 2001, Annals of medicine.

[48]  Alex J Sutton,et al.  Asymmetric funnel plots and publication bias in meta-analyses of diagnostic accuracy. , 2002, International journal of epidemiology.

[49]  N. Morcillo,et al.  [Clinical utility of a commercial ligase chain-reaction kit for the diagnosis of pulmonary and extrapulmonary tuberculosis in the adult]. , 2001, Revista Argentina de microbiologia.

[50]  Jonathan J Deeks,et al.  Systematic reviews in health care: Systematic reviews of evaluations of diagnostic and screening tests. , 2001, BMJ.

[51]  J. Curtis,et al.  Rapid diagnosis of pleural tuberculosis by polymerase chain reaction. , 1996, American journal of respiratory and critical care medicine.

[52]  S. Jindal,et al.  Evaluation of polymerase chain reaction for detection of Mycobacterium tuberculosis in pleural fluid. , 2001, Chest.

[53]  E. Pérez-Rodríguez,et al.  The use of adenosine deaminase and adenosine deaminase isoenzymes in the diagnosis of tuberculous pleuritis , 2000, Current opinion in pulmonary medicine.

[54]  S. Ehlers,et al.  Diagnosis of extrapulmonary tuberculosis by Gen-Probe amplified Mycobacterium tuberculosis direct test , 1996, Journal of clinical microbiology.

[55]  J. Tyagi,et al.  Utility of a Mycobacterium tuberculosis GC-rich repetitive sequence in the diagnosis of tuberculous pleural effusion by PCR. , 1995, Indian journal of biochemistry & biophysics.

[56]  J. Darbyshire,et al.  Tuberculosis at the end of the 20th century in England and Wales: results of a national survey in 1998 , 2001, Thorax.

[57]  P. Cardona,et al.  Rapid detection of Mycobacterium tuberculosis in respiratory specimens, blood and other non-respiratory specimens by amplification of rRNA. , 1997, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[58]  P. Alonso,et al.  Clinical Evaluation of an In-House IS6110 Polymerase Chain Reaction for Diagnosis of Tuberculosis , 2000, European Journal of Clinical Microbiology and Infectious Diseases.

[59]  N. Bhanu,et al.  Diagnosis of pulmonary tuberculosis by polymerase chain reaction for MPB64 gene: an evaluation in a blind study. , 1998, The Indian journal of chest diseases & allied sciences.

[60]  Victor M Montori,et al.  Conducting systematic reviews of diagnostic studies: didactic guidelines , 2002, BMC medical research methodology.

[61]  C. Liam,et al.  Causes of pleural exudates in a region with a high incidence of tuberculosis , 2000, Respirology.

[62]  G. Woods,et al.  Molecular techniques in mycobacterial detection. , 2001, Archives of pathology & laboratory medicine.

[63]  K. Yuen,et al.  Single-tube nested PCR in the diagnosis of tuberculosis. , 1996, Journal of clinical pathology.

[64]  Update: Nucleic acid amplification tests for tuberculosis. , 2000, MMWR. Morbidity and mortality weekly report.

[65]  L. Valdés,et al.  Tuberculous pleurisy: a study of 254 patients. , 1998, Archives of internal medicine.