Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter
暂无分享,去创建一个
Pau Bernadó | Julio Montoya | H. Jacobs | P. Bernadó | J. Sydow | J. Montoya | M. Solà | M. Coll | Howard T Jacobs | Miquel Coll | Anna Rubio-Cosials | Jasmin F Sydow | Nereida Jiménez-Menéndez | Pablo Fernández-Millán | Maria Solà | P. Fernández-Millán | A. Rubio-Cosials | N. Jiménez-Menéndez
[1] S. Kuroda,et al. Overexpression of mitochondrial transcription factor A (TFAM) ameliorates delayed neuronal death due to transient forebrain ischemia in mice , 2010, Neuropathology : official journal of the Japanese Society of Neuropathology.
[2] L. Lally. The CCP 4 Suite — Computer programs for protein crystallography , 1998 .
[3] C. Gustafsson,et al. The mitochondrial RNA polymerase contributes critically to promoter specificity in mammalian cells , 2004, The EMBO journal.
[4] Dongchon Kang,et al. Frequent truncating mutation of TFAM induces mitochondrial DNA depletion and apoptotic resistance in microsatellite-unstable colorectal cancer. , 2011, Cancer research.
[5] N. Hamasaki,et al. Regulation of mitochondrial D‐loops by transcription factor A and single‐stranded DNA‐binding protein , 2002, EMBO reports.
[6] G. Shadel,et al. Human mitochondrial transcription factor B1 methylates ribosomal RNA at a conserved stem-loop , 2003, Nature Genetics.
[7] N. Hamasaki,et al. Human mitochondrial DNA is packaged with TFAM. , 2003, Nucleic acids research.
[8] G. Sheldrick. A short history of SHELX. , 2008, Acta crystallographica. Section A, Foundations of crystallography.
[9] Patrice Gouet,et al. ESPript: analysis of multiple sequence alignments in PostScript , 1999, Bioinform..
[10] D. Crothers,et al. Stepwise binding and bending of DNA by Escherichia coli integration host factor , 2006, Proceedings of the National Academy of Sciences.
[11] Pau Bernadó,et al. Effect of interdomain dynamics on the structure determination of modular proteins by small-angle scattering , 2010, European Biophysics Journal.
[12] J. N. Topper,et al. Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements , 1987, Cell.
[13] Shamkant B. Navathe,et al. MITOMAP: a human mitochondrial genome database—2004 update , 2004, Nucleic Acids Res..
[14] G M Clore,et al. Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. , 2001, Journal of molecular biology.
[15] A. Rich,et al. A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[16] G. Marius Clore,et al. Molecular Basis for Synergistic Transcriptional Activation by Oct1 and Sox2 Revealed from the Solution Structure of the 42-kDa Oct1·Sox2·Hoxb1-DNA Ternary Transcription Factor Complex* , 2004, Journal of Biological Chemistry.
[17] H. Jacobs,et al. Overexpression of MTERFD1 or MTERFD3 impairs the completion of mitochondrial DNA replication , 2011, Molecular Biology Reports.
[18] A. Fersht,et al. Biophysical characterizations of human mitochondrial transcription factor A and its binding to tumor suppressor p53 , 2009, Nucleic acids research.
[19] N. Hamasaki,et al. The C-terminal tail of mitochondrial transcription factor a markedly strengthens its general binding to DNA. , 2007, Journal of biochemistry.
[20] Justin L Cotney,et al. Evidence for an Early Gene Duplication Event in the Evolution of the Mitochondrial Transcription Factor B Family and Maintenance of rRNA Methyltransferase Activity in Human mtTFB1 and mtTFB2 , 2006, Journal of Molecular Evolution.
[21] David A. Case,et al. Structural basis for DNA bending by the architectural transcription factor LEF-1 , 1995, Nature.
[22] N. Hamasaki,et al. Architectural Role of Mitochondrial Transcription Factor A in Maintenance of Human Mitochondrial DNA , 2004, Molecular and Cellular Biology.
[23] F. Pattou,et al. PDX1 deficiency causes mitochondrial dysfunction and defective insulin secretion through TFAM suppression. , 2009, Cell metabolism.
[24] P. Frachon,et al. Organization and dynamics of human mitochondrial DNA , 2004, Journal of Cell Science.
[25] Santiago Costantino,et al. The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures. , 2007, Molecular biology of the cell.
[26] R. Wiesner,et al. Transient overexpression of mitochondrial transcription factor A (TFAM) is sufficient to stimulate mitochondrial DNA transcription, but not sufficient to increase mtDNA copy number in cultured cells. , 2004, Nucleic acids research.
[27] C. Gustafsson,et al. Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA , 2002, Nature Genetics.
[28] M. Blackledge,et al. Structural characterization of flexible proteins using small-angle X-ray scattering. , 2007, Journal of the American Chemical Society.
[29] C. Cameron,et al. Core human mitochondrial transcription apparatus is a regulated two-component system in vitro , 2010, Proceedings of the National Academy of Sciences.
[30] D. Kang,et al. Binding of human mitochondrial transcription factor A, an HMG box protein, to a four-way DNA junction. , 2000, Biochemical and biophysical research communications.
[31] W. Wheaton,et al. Mitochondrial metabolism and ROS generation are essential for Kras-mediated tumorigenicity , 2010, Proceedings of the National Academy of Sciences.
[32] D. A. Clayton,et al. Addition of a 29 residue carboxyl-terminal tail converts a simple HMG box-containing protein into a transcriptional activator. , 1995, Journal of molecular biology.
[33] H. Jacobs,et al. Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells , 2006, Nucleic acids research.
[34] R. Wiesner,et al. Import of mitochondrial transcription factor A (TFAM) into rat liver mitochondria stimulates transcription of mitochondrial DNA. , 2003, Nucleic acids research.
[35] Xiang-Jun Lu,et al. 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures , 2008, Nature Protocols.
[36] D. Svergun,et al. CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates , 1995 .
[37] F. Gomis-Rüth,et al. Cut and move: protein machinery for DNA processing in bacterial conjugation. , 2006, Current opinion in structural biology.
[38] Hiroshi Kimura,et al. The functional organization of mitochondrial genomes in human cells , 2004, BMC Biology.
[39] H. Uramoto,et al. Human mitochondrial transcription factor A binds preferentially to oxidatively damaged DNA. , 2002, Biochemical and biophysical research communications.
[40] Dmitri I. Svergun,et al. PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .
[41] C. Pabo,et al. Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins , 1999, Nature.
[42] James E Masse,et al. The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. , 2002, Journal of molecular biology.
[43] H. Endo,et al. Biochemical properties of Caenorhabditis elegans HMG-5, a regulator of mitochondrial DNA. , 2011, Journal of biochemistry.
[44] W. Hauswirth,et al. In organello footprint analysis of human mitochondrial DNA: human mitochondrial transcription factor A interactions at the origin of replication , 1994, Molecular and cellular biology.
[45] V. Bohr,et al. The mitochondrial transcription factor A functions in mitochondrial base excision repair. , 2010, DNA repair.
[46] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[47] D. Rousseau,et al. The Layered Structure of Human Mitochondrial DNA Nucleoids* , 2008, Journal of Biological Chemistry.
[48] M. Parisi,et al. DNA wrapping and bending by a mitochondrial high mobility group-like transcriptional activator protein. , 1992, The Journal of biological chemistry.
[49] G. Barsh,et al. Mitochondrial transcription factor A is necessary for mtDNA maintance and embryogenesis in mice , 1998, Nature Genetics.
[50] Kjell Hultenby,et al. Mitochondrial transcription factor A regulates mtDNA copy number in mammals. , 2004, Human molecular genetics.
[51] F. Murphy,et al. The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity. , 2003, Nucleic acids research.
[52] D. Temiakov,et al. TFB2 Is a Transient Component of the Catalytic Site of the Human Mitochondrial RNA Polymerase , 2009, Cell.
[53] J. Nix,et al. Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A , 2009, Nucleic acids research.
[54] K. Stott,et al. Structure of a complex of tandem HMG boxes and DNA. , 2006, Journal of molecular biology.
[55] G. Shadel,et al. Human Mitochondrial Transcription Factor B1 Interacts with the C-Terminal Activation Region of h-mtTFA and Stimulates Transcription Independently of Its RNA Methyltransferase Activity , 2003, Molecular and Cellular Biology.
[56] J. Montoya,et al. The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units , 1983, Cell.