Ultra-High Resolution 3D Imaging of Whole Cells

[1]  R. Dobarzić,et al.  [Fluorescence microscopy]. , 1975, Plucne bolesti i tuberkuloza.

[2]  AC Tose.  Cell , 1993, Cell.

[3]  J. Rothman,et al.  Binding of coatomer to Golgi membranes requires ADP-ribosylation factor. , 1993, The Journal of biological chemistry.

[4]  S. Hell,et al.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. , 1994, Optics letters.

[5]  T. R. Judge,et al.  A review of phase unwrapping techniques in fringe analysis , 1994 .

[6]  J. Rothman,et al.  Bidirectional Transport by Distinct Populations of COPI-Coated Vesicles , 1997, Cell.

[7]  T G Frey,et al.  The internal structure of mitochondria. , 2000, Trends in biochemical sciences.

[8]  M. Gustafsson,et al.  Phase‐retrieved pupil functions in wide‐field fluorescence microscopy , 2004, Journal of microscopy.

[9]  Takeo Kanade,et al.  A Correlation-Based Approach to Robust Point Set Registration , 2004, ECCV.

[10]  R. Hawley,et al.  The genetics and molecular biology of the synaptonemal complex. , 2004, Annual review of cell and developmental biology.

[11]  Rafael Yuste,et al.  Fluorescence microscopy today , 2005, Nature Methods.

[12]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[13]  Michael D. Mason,et al.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.

[14]  S. Hell,et al.  Comparison of I5M and 4Pi‐microscopy , 2006, Journal of microscopy.

[15]  Michael J Rust,et al.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.

[16]  R. Hochstrasser,et al.  Wide-field subdiffraction imaging by accumulated binding of diffusing probes , 2006, Proceedings of the National Academy of Sciences.

[17]  S. Hell.  Far-Field Optical Nanoscopy , 2007, Science.

[18]  Dirk Wollherr,et al.  A clustering method for efficient segmentation of 3D laser data , 2008, 2008 IEEE International Conference on Robotics and Automation.

[19]  Alexander Egner,et al.  Isotropic 3D Nanoscopy based on single emitter switching. , 2008, Optics express.

[20]  X. Zhuang,et al.  Whole cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution , 2008, Nature Methods.

[21]  S. Ram,et al.  High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells. , 2008, Biophysical journal.

[22]  P. Carlton,et al.  Three-dimensional structured illumination microscopy and its application to chromosome structure , 2008, Chromosome Research.

[23]  E. Betzig,et al.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics , 2008, Nature Methods.

[24]  S. Hess,et al.  Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples , 2008, Nature Methods.

[25]  J. Lippincott-Schwartz,et al.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure , 2009, Proceedings of the National Academy of Sciences.

[26]  Samuel J. Lord,et al.  Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function , 2009, Proceedings of the National Academy of Sciences.

[27]  Marcel A. Lauterbach,et al.  Far-Field Optical Nanoscopy , 2009 .

[28]  Martin J. Booth,et al.  Optimum deformable mirror modes for sensorless adaptive optics , 2009 .

[29]  Suliana Manley,et al.  Superresolution imaging using single-molecule localization. , 2010, Annual review of physical chemistry.

[30]  E. Gouaux,et al.  Dynamic superresolution imaging of endogenous proteins on living cells at ultra-high density. , 2010, Biophysical journal.

[31]  Michael W. Davidson,et al.  Nanoscale architecture of integrin-based cell adhesions , 2010, Nature.

[32]  Matthew D. Lew,et al.  Three-dimensional superresolution colocalization of intracellular protein superstructures and the cell surface in live Caulobacter crescentus , 2011, Proceedings of the National Academy of Sciences.

[33]  Stephan J. Sigrist,et al.  RIM-Binding Protein, a Central Part of the Active Zone, Is Essential for Neurotransmitter Release , 2011, Science.

[34]  Harald F Hess,et al.  Superresolution Fluorescence Imaging of Mitochondrial Nucleoids Reveals Their Spatial Range, Limits, and Membrane Interaction , 2011, Molecular and Cellular Biology.

[35]  S. Hell,et al.  Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores , 2011, Nature Methods.

[36]  Steven P. Callahan,et al.  Sample drift correction in 3D fluorescence photoactivation localization microscopy , 2011 .

[37]  Baba C. Vemuri,et al.  Robust Point Set Registration Using Gaussian Mixture Models , 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[38]  Keith A. Lidke,et al.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging , 2011, Biomedical optics express.

[39]  Joerg Bewersdorf,et al.  Optical nanoscopy: from acquisition to analysis. , 2012, Annual review of biomedical engineering.

[40]  Jefferson K. Chen,et al.  Interplay between Synaptonemal Complex, Homologous Recombination, and Centromeres during Mammalian Meiosis , 2012, PLoS genetics.

[41]  Shu Jia,et al.  Ultra-bright Photoactivatable Fluorophores Created by Reductive Caging , 2012, Nature Methods.

[42]  Hazen P. Babcock,et al.  Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton , 2011, Nature Methods.

[43]  D. Heermann,et al.  The Impact of Entropy on the Spatial Organization of Synaptonemal Complexes within the Cell Nucleus , 2012, PloS one.

[44]  Martin J Booth,et al.  Adaptive optics enables 3D STED microscopy in aberrating specimens. , 2012, Optics express.

[45]  R. Parthasarathy.  Rapid, accurate particle tracking by calculation of radial symmetry centers , 2012, Nature Methods.

[46]  Thorsten Staudt,et al.  Maturation-Dependent HIV-1 Surface Protein Redistribution Revealed by Fluorescence Nanoscopy , 2012, Science.

[47]  Sjoerd Stallinga,et al.  Measuring image resolution in optical nanoscopy , 2013, Nature Methods.

[48]  Tobias M. P. Hartwich,et al.  Video-rate nanoscopy using sCMOS camera- specific single-molecule localization algorithms , 2013 .

[49]  X. Zhuang,et al.  Actin, Spectrin, and Associated Proteins Form a Periodic Cytoskeletal Structure in Axons , 2013, Science.

[50]  J. Briggs.  Structural biology in situ--the potential of subtomogram averaging. , 2013, Current opinion in structural biology.

[51]  D. Endy,et al.  Refactoring bacteriophage T 7 , 2006 .

[52]  J. Asara,et al.  CEP162 is an axoneme-recognition protein promoting ciliary transition zone assembly at the cilia base , 2013, Nature Cell Biology.

[53]  Bo Hu,et al.  The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection , 2013, Science.

[54]  D. Agard,et al.  Electron counting and beam-induced motion correction enable near atomic resolution single particle cryoEM , 2013, Nature Methods.

[55]  Michael W. Davidson,et al.  Video-rate nanoscopy enabled by sCMOS camera-specific single-molecule localization algorithms , 2013, Nature Methods.

[56]  J. Bewersdorf,et al.  Three dimensional single molecule localization using a phase retrieved pupil function. , 2013, Optics express.

[57]  J. Liao,et al.  Superresolution STED microscopy reveals differential localization in primary cilia , 2013, Cytoskeleton.

[58]  J. Rothman,et al.  Inter-Golgi transport mediated by COPI-containing vesicles carrying small cargoes , 2013, eLife.

[59]  P. Gönczy,et al.  Resolution Doubling in 3D-STORM Imaging through Improved Buffers , 2013, PloS one.

[60]  Prabuddha Sengupta,et al.  Distribution of ESCRT Machinery at HIV Assembly Sites Reveals Virus Scaffolding of ESCRT Subunits , 2014, Science.

[61]  Wei Zhang,et al.  Correction of depth-dependent aberrations in 3D single-molecule localization and super-resolution microscopy. , 2014, Optics letters.

[62]  C. Jacobs-Wagner,et al.  Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation , 2014, eLife.

[63]  Xueming Li,et al.  Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm. , 2014, Optics express.

[64]  K. Anderson,et al.  The Kinesin-4 Protein KIF7 Regulates Mammalian Hedgehog Signaling by Organizing the Cilia Tip Compartment , 2014, Nature Cell Biology.

[65]  Mike Heilemann,et al.  Increasing the brightness of cyanine fluorophores for single-molecule and superresolution imaging. , 2014, Chemphyschem : a European journal of chemical physics and physical chemistry.

[66]  Johannes B. Woehrstein,et al.  Multiplexed 3D Cellular Super-Resolution Imaging with DNA-PAINT and Exchange-PAINT , 2014, Nature Methods.

[67]  Derek Toomre,et al.  Super-resolution imaging of the Golgi in live cells with a bioorthogonal ceramide probe. , 2014, Angewandte Chemie.

[68]  M. Davidson,et al.  Molecular mechanism of vinculin activation and nano-scale spatial organization in focal adhesions , 2015, Nature Cell Biology.

[69]  Christopher R. Wood,et al.  Ciliary ectosomes: transmissions from the cell's antenna. , 2015, Trends in cell biology.

[70]  Fang Huang,et al.  Quantifying and Optimizing Single-Molecule Switching Nanoscopy at High Speeds , 2015, PloS one.

[71]  M. Sauer,et al.  Elucidation of synaptonemal complex organization by super-resolution imaging with isotropic resolution , 2015, Proceedings of the National Academy of Sciences.

[72]  S. Stallinga,et al.  Resolution improvement by 3D particle averaging in localization microscopy , 2015, Methods and applications in fluorescence.

[73]  Brian Patton,et al.  Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy , 2015 .

[74]  P. Bork,et al.  In situ structural analysis of the human nuclear pore complex , 2015, Nature.

[75]  J. Liao,et al.  Superresolution Pattern Recognition Reveals the Architectural Map of the Ciliary Transition Zone , 2015, Scientific Reports.

[76]  Matthew D. Lew,et al.  Correcting field-dependent aberrations with nanoscale accuracy in three-dimensional single-molecule localization microscopy. , 2015, Optica.

[77]  Daichi Kamiyama,et al.  Heavy water: a simple solution to increasing the brightness of fluorescent proteins in super-resolution imaging. , 2015, Chemical communications.