Activation and Stiffness of the Inhibited States of F1-ATPase Probed by Single-molecule Manipulation

F1-ATPase (F1), a soluble portion of FoF1-ATP synthase (FoF1), is an ATP-driven motor in which γϵ subunits rotate in the α3β3 cylinder. Activity of F1 and FoF1 from Bacillus PS3 is attenuated by the ϵ subunit in an inhibitory extended form. In this study we observed ATP-dependent transition of ϵ in single F1 molecules from extended form to hairpin form by fluorescence resonance energy transfer. The results justify the previous bulk experiments and ensure that fraction of F1 with hairpin ϵ directly determines the fraction of active F1 at any ATP concentration. Next, mechanical activation and stiffness of ϵ-inhibited F1 were examined by the forced rotation of magnetic beads attached to γ. Compared with ADP inhibition, which is another manner of inhibition, rotation by a larger angle was required for the activation from ϵ inhibition when the beads were forced to rotate to ATP hydrolysis direction, and more torque was required to reach the same rotation angle when beads were forced to rotate to ATP synthesis direction. The results imply that if FoF1 is resting in the ϵ-inhibited state, Fo motor must transmit to γ a torque larger than expected from thermodynamic equilibrium to initiate ATP synthesis.

[1]  H. Berg,et al.  The speed of the flagellar rotary motor of Escherichia coli varies linearly with protonmotive force , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Michael Börsch,et al.  Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase , 2004, Nature Structural &Molecular Biology.

[3]  Masasuke Yoshida,et al.  Isolated ϵ Subunit of Thermophilic F1-ATPase Binds ATP* , 2003, Journal of Biological Chemistry.

[4]  Masasuke Yoshida,et al.  Purine but Not Pyrimidine Nucleotides Support Rotation of F1-ATPase* , 2001, The Journal of Biological Chemistry.

[5]  O. Schwarz,et al.  The H+/ATP coupling ratio of the ATP synthase from thiol‐modulated chloroplasts and two cyanobacterial strains is four , 1996, FEBS letters.

[6]  The regulator of the F1 motor: inhibition of rotation of cyanobacterial F1‐ATPase by the ε subunit , 2006 .

[7]  Masasuke Yoshida,et al.  Structures of the thermophilic F1-ATPase ε subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1 , 2007, Proceedings of the National Academy of Sciences.

[8]  V. V. Bulygin,et al.  Rotation of subunits during catalysis by Escherichia coli F1-ATPase. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[9]  H. Berg,et al.  Powering the flagellar motor of Escherichia coli with an external voltage source , 1995, Nature.

[10]  Masasuke Yoshida,et al.  Movement of the Helical Domain of the ε Subunit Is Required for the Activation of Thermophilic F1-ATPase* , 2000, The Journal of Biological Chemistry.

[11]  Kazuhiko Kinosita,et al.  Activation of pausing F1 motor by external force. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[12]  V. V. Bulygin,et al.  Rotation of the ε Subunit during Catalysis by Escherichia coli FOF1-ATP Synthase* , 1998, The Journal of Biological Chemistry.

[13]  Masasuke Yoshida,et al.  Thermophilic F1-ATPase Is Activated without Dissociation of an Endogenous Inhibitor, ε Subunit* , 1997, The Journal of Biological Chemistry.

[14]  S. Vik,et al.  Chemical modification of mono-cysteine mutants allows a more global look at conformations of the ε subunit of the ATP synthase from Escherichia coli , 2007, Journal of bioenergetics and biomembranes.

[15]  Hiroyasu Itoh,et al.  Coupling of Rotation and Catalysis in F1-ATPase Revealed by Single-Molecule Imaging and Manipulation , 2007, Cell.

[16]  M. Wilce,et al.  Structure of the γ–ɛ complex of ATP synthase , 2000, Nature Structural Biology.

[17]  Daniel J. Cipriano,et al.  Stochastic High-speed Rotation of Escherichia coli ATP Synthase F1 Sector , 2006, Journal of Biological Chemistry.

[18]  Kazuhiko Kinosita,et al.  Direct observation of the rotation of F1-ATPase , 1997, Nature.

[19]  P. Dimroth,et al.  Essentials for ATP synthesis by F1F0 ATP synthases. , 2009, Annual review of biochemistry.

[20]  The role of the epsilon subunit in the Escherichia coli ATP synthase. The C-terminal domain is required for efficient energy coupling. , 2006, The Journal of biological chemistry.

[21]  Masasuke Yoshida,et al.  Regulatory mechanisms of proton-translocating F(O)F (1)-ATP synthase. , 2008, Results and problems in cell differentiation.

[22]  Y. Lifshitz,et al.  Effects of P 1 and ADP on ATPase activity in chloroplasts. , 1972, Biochimica et biophysica acta.

[23]  R. Nakamoto,et al.  The rotary mechanism of the ATP synthase. , 2008, Archives of biochemistry and biophysics.

[24]  Paola Turina,et al.  H+/ATP ratio of proton transport‐coupled ATP synthesis and hydrolysis catalysed by CF0F1—liposomes , 2003, The EMBO journal.

[25]  Masasuke Yoshida,et al.  Real-time Monitoring of Conformational Dynamics of the ϵ Subunit in F1-ATPase* , 2005, Journal of Biological Chemistry.

[26]  Kazuhiko Kinosita,et al.  Pause and rotation of F1-ATPase during catalysis , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[27]  K. Hara,et al.  The role of the betaDELSEED motif of F1-ATPase: propagation of the inhibitory effect of the epsilon subunit. , 2001, The Journal of biological chemistry.

[28]  Masasuke Yoshida,et al.  F0F1-ATPase/Synthase Is Geared to the Synthesis Mode by Conformational Rearrangement of ϵ Subunit in Response to Proton Motive Force and ADP/ATP Balance* , 2003, Journal of Biological Chemistry.

[29]  J. Mitchell Guss,et al.  Crystal structure of the ϵ subunit of the proton-translocating ATP synthase from Escherichia coli , 1997 .

[30]  Masasuke Yoshida,et al.  Regulatory Interplay between Proton Motive Force, ADP, Phosphate, and Subunit ϵ in Bacterial ATP Synthase* , 2007, Journal of Biological Chemistry.

[31]  Hiroyasu Itoh,et al.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase , 2001, Nature.

[32]  Kazuhiko Kinosita,et al.  Effect of ε subunit on the rotation of thermophilic Bacillus F1‐ATPase , 2009, FEBS letters.

[33]  David Spetzler,et al.  Microsecond time scale rotation measurements of single F1-ATPase molecules. , 2006, Biochemistry.

[34]  Hiroyuki Fujita,et al.  Highly coupled ATP synthesis by F1-ATPase single molecules , 2005, Nature.

[35]  Masasuke Yoshida,et al.  ε Subunit, an Endogenous Inhibitor of Bacterial F1-ATPase, Also Inhibits F0F1-ATPase* , 1999, The Journal of Biological Chemistry.

[36]  A. Vinogradov,et al.  Energy-linked binding of Pi is required for continuous steady-state proton-translocating ATP hydrolysis catalyzed by F0.F1 ATP synthase. , 2006, Biochemistry.

[37]  Masasuke Yoshida,et al.  Role of the ϵ Subunit of Thermophilic F1-ATPase as a Sensor for ATP* , 2007, Journal of Biological Chemistry.

[38]  Masasuke Yoshida,et al.  F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits , 2007, Nature Structural &Molecular Biology.

[39]  R. Iino,et al.  Mechanism of Inhibition by C-terminal α-Helices of the ϵ Subunit of Escherichia coli FoF1-ATP Synthase* , 2009, The Journal of Biological Chemistry.

[40]  W. Junge The critical electric potential difference for photophosphorylation. Its relation to the chemiosmotic hypothesis and to the triggering requirements of the ATPase system. , 1970, European journal of biochemistry.

[41]  Kazuhiko Kinosita,et al.  Direct Observation of the Rotation of ε Subunit in F1-ATPase* , 1998, The Journal of Biological Chemistry.

[42]  R. Capaldi,et al.  Solution Structure of the ε Subunit of the F1-ATPase from Escherichia coli and Interactions of This Subunit with β Subunits in the Complex* , 1998, The Journal of Biological Chemistry.

[43]  Masasuke Yoshida,et al.  Probing conformations of the subunit of F 0F 1-ATP synthase in catalysis , 2006 .

[44]  Masasuke Yoshida,et al.  ATP synthase — a marvellous rotary engine of the cell , 2001, Nature Reviews Molecular Cell Biology.

[45]  V. V. Bulygin,et al.  Rotor/Stator Interactions of the ϵ Subunit in Escherichia coli ATP Synthase and Implications for Enzyme Regulation* , 2004, Journal of Biological Chemistry.

[46]  Masasuke Yoshida,et al.  Cross-linking of Two β Subunits in the Closed Conformation in F1-ATPase* , 1999, The Journal of Biological Chemistry.

[47]  M. Murataliev,et al.  Tightly bound adenosine diphosphate, which inhibits the activity of mitochondrial F1‐ATPase, is located at the catalytic site of the enzyme , 1985, FEBS letters.

[48]  J. Jault,et al.  Slow binding of ATP to noncatalytic nucleotide binding sites which accelerates catalysis is responsible for apparent negative cooperativity exhibited by the bovine mitochondrial F1-ATPase. , 1993, The Journal of biological chemistry.

[49]  S. Dunn,et al.  Effect of the ε-Subunit on Nucleotide Binding to Escherichia coli F1-ATPase Catalytic Sites* , 1999, The Journal of Biological Chemistry.

[50]  Kazuhiko Kinosita,et al.  ATP-driven stepwise rotation of FoF1-ATP synthase. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[51]  H. Noji,et al.  F1-ATPase: a highly efficient rotary ATP machine. , 2000, Essays in biochemistry.

[52]  P. Boyer,et al.  The binding change mechanism for ATP synthase--some probabilities and possibilities. , 1993, Biochimica et biophysica acta.