Combining hydrophobicity and helicity: a novel approach to membrane protein structure prediction.
暂无分享,去创建一个
C. Deber | C M Deber | L P Liu | L. P. Liu | Li-Ping Liu
[1] Differentiation between transmembrane helices and peripheral helices by the deconvolution of circular dichroism spectra of membrane proteins , 1992, Protein science : a publication of the Protein Society.
[2] G. Rummel,et al. Crystal structures explain functional properties of two E. coli porins , 1992, Nature.
[3] Yoshinori Fujiyoshi,et al. Atomic model of plant light-harvesting complex by electron crystallography , 1994, Nature.
[4] E. Pebay-Peyroula,et al. X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. , 1997, Science.
[5] B. Matthews,et al. Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution. , 1987, Journal of molecular biology.
[6] M. Degli Esposti,et al. A critical evaluation of the hydropathy profile of membrane proteins. , 1990, European journal of biochemistry.
[7] T. Steitz,et al. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. , 1986, Annual review of biophysics and biophysical chemistry.
[8] T. Hynes,et al. The crystal structure of staphylococcal nuclease refined at 1.7 Å resolution , 1991, Proteins.
[9] L. Chung. A fluorescamine assay for membrane protein and peptide samples with non-amino-containing lipids. , 1997, Analytical biochemistry.
[10] B. Martoglio,et al. The protein-conducting channel in the membrane of the endoplasmic reticulum is open laterally toward the lipid bilayer , 1995, Cell.
[11] J. Barber,et al. Supramolecular structure of the photosystem II complex from green plants and cyanobacteria. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[12] P. McGlynn,et al. Evaluation of structure-function relationships in the core light-harvesting complex of photosynthetic bacteria by reconstitution with mutant polypeptides. , 1997, Biochemistry.
[13] C. Deber,et al. Anionic phospholipids modulate peptide insertion into membranes. , 1997, Biochemistry.
[14] B. Chait,et al. The structure of the potassium channel: molecular basis of K+ conduction and selectivity. , 1998, Science.
[15] C. Deber,et al. Guidelines for membrane protein engineering derived from de novo designed model peptides. , 1998, Biopolymers.
[16] J. Jenkins,et al. The structure of OmpF porin in a tetragonal crystal form. , 1995, Structure.
[17] G. Heijne. Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. , 1992, Journal of molecular biology.
[18] C. Bond,et al. Structure of a human lysosomal sulfatase. , 1997, Structure.
[19] S. Lavielle,et al. Three-dimensional structure of the highly conserved seventh transmembrane domain of G-protein-coupled receptors. , 1994, European journal of biochemistry.
[20] P. Fromme,et al. Photosystem I at 4 Å resolution represents the first structural model of a joint photosynthetic reaction centre and core antenna system , 1996, Nature Structural Biology.
[21] B. Lee,et al. Conformational preference functions for predicting helices in membrane proteins , 1993, Biopolymers.
[22] P. Preusch,et al. Progress away from ‘no crystals, no grant’ , 1998, Nature Structural Biology.
[23] J. Gouaux,et al. Structure of Staphylococcal α-Hemolysin, a Heptameric Transmembrane Pore , 1996, Science.
[24] Y. Shai,et al. Spectroscopic and functional characterization of the putative transmembrane segment of the minK potassium channel. , 1993, Biochemistry.
[25] R. Reithmeier,et al. Characterization and modeling of membrane proteins using sequence analysis. , 1995, Current opinion in structural biology.
[26] P Argos,et al. Prediction of transmembrane segments in proteins utilising multiple sequence alignments. , 1994, Journal of molecular biology.
[27] M. Kanehisa,et al. Cluster analysis of amino acid indices for prediction of protein structure and function. , 1988, Protein engineering.
[28] T. Tomizaki,et al. The Whole Structure of the 13-Subunit Oxidized Cytochrome c Oxidase at 2.8 Å , 1996, Science.
[29] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[30] T. Schwartz,et al. Locating ligand-binding sites in 7TM receptors by protein engineering. , 1994, Current opinion in biotechnology.
[31] T. Tomizaki,et al. Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 A , 1995, Science.
[32] H. Bayley,et al. Staphylococcal alpha-toxin, streptolysin-O, and Escherichia coli hemolysin: prototypes of pore-forming bacterial cytolysins , 1996, Archives of Microbiology.
[33] C. Deber,et al. Threshold hydrophobicity dictates helical conformations of peptides in membrane environments. , 1998, Biopolymers.
[34] D C Rees,et al. Refined crystal structure of carboxypeptidase A at 1.54 A resolution. , 1983, Journal of molecular biology.
[35] G. Arteca,et al. Three-dimensional lipophilicity characterization of molecular pores and channel-like cavities. , 1996, Journal of molecular graphics.
[36] H. Eklund,et al. Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution. , 1990, Journal of molecular biology.
[37] M. Cascio,et al. Evaluation of methods for the prediction of membrane protein secondary structures. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[38] K. Schulten,et al. The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum. , 1996, Structure.
[39] C. Horváth,et al. Solvophobic interactions in liquid chromatography with nonpolar stationary phases , 1976 .
[40] Hartmut Michel,et al. Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans , 1995, Nature.
[41] S. Lee,et al. De novo design, synthesis, and characterization of a pore-forming small globular protein and its insertion into lipid bilayers. , 1997, Biochemistry.
[42] R. Henderson,et al. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. , 1990, Journal of molecular biology.
[43] P. Henklein,et al. Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV‐1‐infected cells , 1996, FEBS letters.
[44] S. O. Smith,et al. Structural perspectives of phospholamban, a helical transmembrane pentamer. , 1997, Annual review of biophysics and biomolecular structure.
[45] C. Sanders,et al. Escherichia coli diacylglycerol kinase: a case study in the application of solution NMR methods to an integral membrane protein. , 1997, Biophysical journal.
[46] J. Deisenhofer,et al. The Photosynthetic Reaction Center from the Purple Bacterium Rhodopseudomonas viridis , 1989, Science.
[47] W R Taylor,et al. A model recognition approach to the prediction of all-helical membrane protein structure and topology. , 1994, Biochemistry.
[48] C. Deber,et al. Alpha-helical, but not beta-sheet, propensity of proline is determined by peptide environment. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[49] R. Doolittle,et al. A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.