Identification of Potential Urinary Metabolite Biomarkers of Pseudomonas aeruginosa Ventilator-Associated Pneumonia

Introduction: Ventilator-associated pneumonia (VAP) caused by Pseudomonas aeruginosa is a major cause of morbidity and mortality in hospital intensive care units (ICU). Rapid identification of P. aeruginosa-derived markers in easily accessible patients’ samples can enable an early detection of P. aeruginosa VAP (VAP-PA), thereby stewarding antibiotic use and improving clinical outcomes. Methods: Metabolites were analysed using liquid chromatography-mass spectrometry (LC-MS) in prospectively collected urine samples from mechanically ventilated patients admitted to the Antwerp University Hospital ICU. Patients were followed from the start of mechanical ventilation (n = 100 patients) till the time of clinical diagnosis of VAP (n = 13). Patients (n = 8) in whom diagnosis of VAP was further confirmed by culturing respiratory samples and urine samples were studied for semi-quantitative metabolomics. Results: We first show that multivariate analyses highly discriminated VAP-PA from VAP–non-PA as well as from the pre-infection groups (R2 = .97 and .98, respectively). A further univariate analysis identified 58 metabolites that were significantly elevated or uniquely present in VAP-PA compared to the VAP–non-PA and pre-infection groups (P < .05). These comprised both a known metabolite of histidine as well as a novel nicotine metabolite. Most interestingly, we identified 3 metabolites that were not only highly upregulated for, but were also highly specific to, VAP-PA, as these metabolites were completely absent in all pre-infection timepoints and in VAP–non-PA group. Conclusions: Considerable differences exist between urine metabolites in VAP-PA compared to VAP due to other bacterial aetiologies as well to non-VAP (pre-infection) timepoints. The unique urinary metabolic biomarkers we describe here, if further validated, could serve as highly specific diagnostic biomarkers of VAP-PA.

[1]  U. Argikar,et al.  UDP-Glucuronosyltransferases , 2019, Handbook of Drug Metabolism.

[2]  J. Rello,et al.  Nosocomial pneumonia in 27 ICUs in Europe: perspectives from the EU-VAP/CAP study , 2016, European Journal of Clinical Microbiology & Infectious Diseases.

[3]  P. Kubes,et al.  Bispecific antibody targets multiple Pseudomonas aeruginosa evasion mechanisms in the lung vasculature , 2017, The Journal of clinical investigation.

[4]  H. Vogel,et al.  Plasma metabolomics for the diagnosis and prognosis of H1N1 influenza pneumonia , 2017, Critical Care.

[5]  H. Goossens,et al.  The endotracheal tube microbiome associated with Pseudomonas aeruginosa or Staphylococcus epidermidis , 2016, Scientific Reports.

[6]  P. Jorens Sticking to an Old Definition of Ventilator-Associated Pneumonia Is Not Old-Fashioned , 2016, Respiratory Care.

[7]  J. Rello,et al.  Pseudomonas aeruginosa ventilator-associated pneumonia management , 2016, Infection and drug resistance.

[8]  P. Póvoa,et al.  Incidence and prognosis of ventilator-associated tracheobronchitis (TAVeM): a multicentre, prospective, observational study. , 2015, The Lancet. Respiratory medicine.

[9]  N. Singhal,et al.  MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis , 2015, Front. Microbiol..

[10]  David S. Wishart,et al.  MetaboAnalyst 3.0—making metabolomics more meaningful , 2015, Nucleic Acids Res..

[11]  Wei Zhao,et al.  A multifunctional bispecific antibody protects against Pseudomonas aeruginosa , 2014, Science Translational Medicine.

[12]  M. Antonelli,et al.  Clinical outcomes of Pseudomonas aeruginosa pneumonia in intensive care unit patients , 2013, Intensive Care Medicine.

[13]  R. Vanholder,et al.  A novel UPLC–MS–MS method for simultaneous determination of seven uremic retention toxins with cardiovascular relevance in chronic kidney disease patients , 2013, Analytical and Bioanalytical Chemistry.

[14]  H. Vogel,et al.  Gram-negative and Gram-Positive Bacterial Infections Give Rise to a Different Metabolic Response in a Mouse Model , 2012, Journal of proteome research.

[15]  T. Welte,et al.  Biomarkers in community-acquired pneumonia , 2012, Expert review of respiratory medicine.

[16]  Jun Feng Xiao,et al.  Metabolite identification and quantitation in LC-MS/MS-based metabolomics. , 2012, Trends in analytical chemistry : TRAC.

[17]  Katharina Trunk,et al.  The Opportunistic Pathogen Serratia marcescens Utilizes Type VI Secretion To Target Bacterial Competitors , 2011, Journal of bacteriology.

[18]  A. Khanna,et al.  Incidence, risk stratification, antibiogram of pathogens isolated and clinical outcome of ventilator associated pneumonia , 2011, Indian journal of critical care medicine : peer-reviewed, official publication of Indian Society of Critical Care Medicine.

[19]  Albert J. Fornace,et al.  Metabolomic Analysis in Severe Childhood Pneumonia in The Gambia, West Africa: Findings from a Pilot Study , 2010, PloS one.

[20]  Sirish L. Shah,et al.  Pneumococcal pneumonia: potential for diagnosis through a urinary metabolic profile. , 2009, Journal of proteome research.

[21]  T. Marrie,et al.  Streptococcus pneumoniae and Staphylococcus aureus pneumonia induce distinct metabolic responses. , 2009, Journal of proteome research.

[22]  T. M. O’Connell,et al.  Metabolomic analysis of bronchoalveolar lavage fluid from cystic fibrosis patients , 2009, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[23]  Gordon K. Smyth,et al.  Testing significance relative to a fold-change threshold is a TREAT , 2009, Bioinform..

[24]  J. Lindon,et al.  Systems biology: Metabonomics , 2008, Nature.

[25]  古谷 良輔,et al.  Guidelines for the management of adults with hospital-acquired, ventilator-associated, and healthcare-associated pneumonia. , 2008, American journal of respiratory and critical care medicine.

[26]  D. Klemp,et al.  Volatile organic compounds in the exhaled breath of young patients with cystic fibrosis , 2006, European Respiratory Journal.

[27]  A. Prince,et al.  Pathogen-host interactions in Pseudomonas aeruginosa pneumonia. , 2005, American journal of respiratory and critical care medicine.

[28]  J. Rello,et al.  Pneumonia in the intensive care unit , 2003, Critical care medicine.

[29]  E. Martinez,et al.  Rapid urinary antigen test for diagnosis of pneumococcal community-acquired pneumonia in adults , 2003, European Respiratory Journal.

[30]  J. Timsit,et al.  The significance of distal bronchial samples with commensals in ventilator-associated pneumonia: colonizer or pathogen? , 2002, Chest.

[31]  M. Grisham,et al.  Elevation of nitrotyrosine and nitrate concentrations in cystic fibrosis sputum , 2000, Pediatric pulmonology.

[32]  G. Gilbert,et al.  Rapid diagnosis of Legionella pneumophila serogroup 1 infection with the Binax enzyme immunoassay urinary antigen test , 1997, Journal of clinical microbiology.

[33]  J. Bollag,et al.  Microbial metabolism of pyridine, quinoline, acridine, and their derivatives under aerobic and anaerobic conditions , 1996 .

[34]  R. Wunderink,et al.  Ventilator-associated pneumonia due to Pseudomonas aeruginosa. , 1996, Chest.

[35]  Leonard Leibovici,et al.  Risk factors and a clinical index for diagnosis of Pseudomonas aeruginosa bacteremia. , 1995, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[36]  D. M. Greenberg,et al.  THE BACTERIAL METABOLISM OF L-HYDANTOIN-5-PROPIONIC ACID TO CARBAMYLGLUTAMIC ACID AND GLUTAMIC ACID. , 1963, The Journal of biological chemistry.

[37]  A. Emwas,et al.  The strengths and weaknesses of NMR spectroscopy and mass spectrometry with particular focus on metabolomics research. , 2015, Methods in molecular biology.

[38]  E. Want,et al.  HILIC-UPLC-MS for exploratory urinary metabolic profiling in toxicological studies. , 2011, Analytical chemistry.

[39]  N. Benowitz,et al.  Nicotine chemistry, metabolism, kinetics and biomarkers. , 2009, Handbook of experimental pharmacology.

[40]  M. Durán,et al.  Quantitative gas chromatographic determination of urinary hydantoin-5-propionic acid in patients with disorders of folate/vitamin B12 metabolism. , 1986, Journal of chromatography.