Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.
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[1] B. Honig,et al. Protein structure prediction: inroads to biology. , 2005, Molecular cell.
[2] Sung-Hou Kim,et al. Crystal structure of TM1457 from Thermotoga maritima. , 2005, Journal of structural biology.
[3] Adam Godzik,et al. Connecting the protein structure universe by using sparse recurring fragments. , 2005, Structure.
[4] Adam Godzik,et al. Fragnostic: walking through protein structure space , 2005, Nucleic Acids Res..
[5] Nick V. Grishin,et al. Structural drift: a possible path to protein fold change , 2005, Bioinform..
[6] Sung-Hou Kim,et al. Global mapping of the protein structure space and application in structure-based inference of protein function. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[7] Rachel Kolodny,et al. Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. , 2005, Journal of molecular biology.
[8] Yang Zhang,et al. The protein structure prediction problem could be solved using the current PDB library. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[9] Simon Kasif,et al. Less is more: towards an optimal universal description of protein folds , 2005, ECCB/JBI.
[10] Frances M. G. Pearl,et al. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis , 2004, Nucleic Acids Res..
[11] Alfonso Valencia,et al. Domain definition and target classification for CASP6 , 2005, Proteins.
[12] D T Jones,et al. Prediction of novel and analogous folds using fragment assembly and fold recognition , 2005, Proteins.
[13] David E. Kim,et al. Free modeling with Rosetta in CASP6 , 2005, Proteins.
[14] Yang Zhang,et al. TASSER: An automated method for the prediction of protein tertiary structures in CASP6 , 2005, Proteins.
[15] K Henrick,et al. Electronic Reprint Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions , 2022 .
[16] Nathan Linial,et al. Approximate protein structural alignment in polynomial time. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[17] Ruth Nussinov,et al. FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions , 2004, J. Comput. Biol..
[18] Michael A. Erdmann,et al. Protein similarity from knot theory and geometric convolution , 2004, RECOMB.
[19] W. Pearson,et al. Sensitivity and selectivity in protein structure comparison , 2004, Protein science : a publication of the Protein Society.
[20] Gerard J Kleywegt,et al. Evaluation of protein fold comparison servers , 2003, Proteins.
[21] Tim J. P. Hubbard,et al. SCOP database in 2004: refinements integrate structure and sequence family data , 2004, Nucleic Acids Res..
[22] J. Skolnick,et al. The PDB is a covering set of small protein structures. , 2003, Journal of molecular biology.
[23] Adam Godzik,et al. Flexible structure alignment by chaining aligned fragment pairs allowing twists , 2003, ECCB.
[24] Sung-Hou Kim,et al. A global representation of the protein fold space , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[25] Marcin Feder,et al. A “FRankenstein's monster” approach to comparative modeling: Merging the finest fragments of Fold‐Recognition models and iterative model refinement aided by 3D structure evaluation , 2003, Proteins.
[26] Barry Honig,et al. GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences. , 2003, Methods in enzymology.
[27] P. Røgen,et al. Automatic classification of protein structure by using Gauss integrals , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[28] Frances M. G. Pearl,et al. Quantifying the similarities within fold space. , 2002, Journal of molecular biology.
[29] Tim J. P. Hubbard,et al. MaxBench: evaluation of sequence and structure comparison methods , 2002, Bioinform..
[30] B Honig,et al. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. , 2000, Journal of molecular biology.
[31] P E Bourne,et al. An alternative view of protein fold space , 2000, Proteins.
[32] William R. Taylor,et al. Structure Comparison and Structure Patterns , 2000, J. Comput. Biol..
[33] P E Bourne,et al. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. , 1998, Protein engineering.
[34] S. Bryant,et al. Critical assessment of methods of protein structure prediction (CASP): Round II , 1997, Proteins.
[35] G. Kleywegt. Use of non-crystallographic symmetry in protein structure refinement. , 1996, Acta crystallographica. Section D, Biological crystallography.
[36] Michael Gribskov,et al. Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching , 1996, Comput. Chem..
[37] Chris Sander,et al. The FSSP database: fold classification based on structure-structure alignment of proteins , 1996, Nucleic Acids Res..
[38] S. Bryant,et al. Threading a database of protein cores , 1995, Proteins.
[39] C. Sander,et al. Protein structure comparison by alignment of distance matrices. , 1993, Journal of molecular biology.
[40] M. Levitt,et al. Structural similarity of DNA-binding domains of bacteriophage repressors and the globin core , 1993, Current Biology.
[41] Chris Sander,et al. Globin fold in a bacterial toxin , 1993, Nature.
[42] W R Taylor,et al. Protein structure alignment. , 1989, Journal of molecular biology.
[43] J. Richardson,et al. The anatomy and taxonomy of protein structure. , 1981, Advances in protein chemistry.