Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T)

Stackebrandtia nassauensis Labeda and Kroppenstedt (2005) is the type species of the genus Stackebrandtia, and a member of the actinobacterial family Glycomycetaceae. Stackebrandtia currently contains two species, which are differentiated from Glycomyces spp. by cellular fatty acid and menaquinone composition. Strain LLR-40K-21T is Gram-positive, aerobic, and nonmotile, with a branched substrate mycelium and on some media an aerial mycelium. The strain was originally isolated from a soil sample collected from a road side in Nassau, Bahamas. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of the actinobacterial suborder Glycomycineae. The 6,841,557 bp long single replicon genome with its 6487 protein-coding and 53 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.

[1]  S. Tasker,et al.  Bergey’s Manual of Systematic Bacteriology , 2010 .

[2]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[3]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[4]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541T) , 2009, Standards in genomic sciences.

[5]  Wenjun Li,et al.  Stackebrandtia albiflava sp. nov. and emended description of the genus Stackebrandtia. , 2009, International journal of systematic and evolutionary microbiology.

[6]  E. Stackebrandt,et al.  An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. , 2009, International journal of systematic and evolutionary microbiology.

[7]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541 T ) , 2009 .

[8]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[9]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[10]  Nikos Kyrpides,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[11]  R. Kroppenstedt,et al.  Stackebrandtia nassauensis gen. nov., sp. nov. and emended description of the family Glycomycetaceae. , 2005, International journal of systematic and evolutionary microbiology.

[12]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[13]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[14]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[15]  E. Stackebrandt,et al.  Proposal for a New Hierarchic Classification System, Actinobacteria classis nov. , 1997 .

[16]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[17]  H. Lechevalier,et al.  Glycomyces, a New Genus of the Actinomycetales , 1985 .