Most significant genome regions involved in the control of earliness traits in bread wheat, as revealed by QTL meta-analysis

Earliness is one of the most important adaptation traits in plant breeding. Our purpose was to identify the genome regions of bread wheat involved in the control of earliness and its three components: photoperiod sensitivity (PS), vernalization requirement (VR) and intrinsic earliness (IE). A QTL meta-analysis was carried out to examine the replicability of QTL across 13 independent studies and to propose meta-QTL (MQTL). Initial QTL were projected on a recent consensus map (2004). Quality criteria were proposed to assess the reliability of this projection. These criteria were based on the distances between markers in the QTL regions. Chromosomes of groups 2 and 5 had a greater incidence on earliness control as they carry the known, major genes Ppd and Vrn. Other chromosome regions played an intermediate role in earliness control: 4A [heading date (HD) Meta-QTL], 4B (HD MQTL), 2B (VR MQTL) and 5B (IE MQTL). Markers at this four MQTL should prove helpful in marker-assisted selection, to better control earliness.

[1]  H. Miura,et al.  Characterization of QEet.ocs-5A.1, a quantitative trait locus for ear emergence time on wheat chromosome 5AL , 2002 .

[2]  E. R. Sears Nullisomic Analysis in Common Wheat , 1953, The American Naturalist.

[3]  C. Shindo,et al.  Segregation analysis of heading traits in hexaploid wheat utilizing recombinant inbred lines , 2003, Heredity.

[4]  C. Shindo,et al.  Two-gene systems of vernalization requirement and narrow-sense earliness in einkorn wheat. , 2002, Genome.

[5]  B. Goffinet,et al.  Quantitative trait loci: a meta-analysis. , 2000, Genetics.

[6]  K. Edwards,et al.  A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) , 2004, Theoretical and Applied Genetics.

[7]  J. Syme Ear emergence of Australian, Mexican, and European wheats in relation to time of sowing and their response to vernalization and daylength , 1968 .

[8]  D. Laurie,et al.  RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross. , 1995, Genome.

[9]  R. Macknight,et al.  It's time to flower: the genetic control of flowering time , 2004, BioEssays : news and reviews in molecular, cellular and developmental biology.

[10]  J. Snape,et al.  An update of the Courtot × Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat , 2003, Theoretical and Applied Genetics.

[11]  A. Stelmakh Genetic systems regulating flowering response in wheat , 1997 .

[12]  Imke Tammen,et al.  Quantitative trait loci mapping in dairy cattle: review and meta-analysis , 2004, Genetics Selection Evolution.

[13]  P M Visscher,et al.  Confidence intervals in QTL mapping by bootstrapping. , 1996, Genetics.

[14]  Response of Wheat Genotypes to Temperature and Photoperiod in Natural Conditions , 1989 .

[15]  Alain Charcosset,et al.  Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome , 2004, Genetics.

[16]  J. Snape,et al.  Detection of QTLs for heading time and photoperiod response in wheat using a doubled-haploid population. , 2000, Genome.

[17]  P. Gupta,et al.  QTL mapping for growth and leaf characters in bread wheat , 2003 .

[18]  C. N. Law,et al.  The genetic control of ear-emergence time by chromosomes 5A and 5D of wheat , 1976, Heredity.

[19]  R. Berloo GGT: Software for the display of graphical genotypes , 1999 .

[20]  S. Nègre,et al.  Mapping of quantitative trait loci for field resistance to Fusarium head blight in an European winter wheat , 2003, Theoretical and Applied Genetics.

[21]  G. Glass Primary, Secondary, and Meta-Analysis of Research1 , 1976 .

[22]  C. N. Law,et al.  Genetic analysis of some flowering time and adaptive traits in wheat , 1997 .

[23]  C. N. Law,et al.  A Genetic study of day-length response in wheat , 1978, Heredity.

[24]  Alain Charcosset,et al.  BioMercator: integrating genetic maps and QTL towards discovery of candidate genes , 2004, Bioinform..

[25]  A. Worland The influence of flowering time genes on environmental adaptability in European wheats , 2004, Euphytica.

[26]  H. Miura,et al.  Detection of an earliness per se quantitative trait locus in the proximal region of wheat chromosome 5AL , 1999 .

[27]  J. Snape,et al.  RFLP mapping of the vernalization (Vrn1) and frost resistance (Fr1) genes on chromosome 5A of wheat , 1995, Theoretical and Applied Genetics.

[28]  J. Snape,et al.  Mapping genes for flowering time and frost tolerance in cereals using precise genetic stocks , 2004, Euphytica.

[29]  T. Efremova,et al.  Mapping of the Vrn-B1 gene in Triticum aestivum using microsatellite markers , 2003 .

[30]  J. Snape,et al.  Mapping genes affecting flowering time and frost resistance on chromosome 5B of wheat , 2003, Theoretical and Applied Genetics.

[31]  É. Hanocq,et al.  Detection and mapping of QTL for earliness components in a bread wheat recombinant inbred lines population , 2004, Theoretical and Applied Genetics.

[32]  M. Ganal,et al.  A microsatellite map of wheat. , 1998, Genetics.

[33]  A. Börner,et al.  Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat (Triticum aestivum L.) , 2002, Theoretical and Applied Genetics.

[34]  M. Soller,et al.  A Simple Method to Calculate Resolving Power and Confidence Interval of QTL Map Location , 1997, Behavior genetics.

[35]  P. Langridge,et al.  A consensus map of barley integrating SSR, RFLP, and AFLP markers , 2003 .

[36]  J. Belknap,et al.  The replicability of QTLs for murine alcohol preference drinking behavior across eight independent studies , 2001, Mammalian Genome.

[37]  A. Stelmakh Geographic distribution of Vrn-genes in landraces and improved varieties of spring bread wheat , 1990, Euphytica.

[38]  J. B. Reid,et al.  The genetic control of flowering in pea , 1997 .

[39]  Kiyoaki Kato,et al.  RFLP mapping of the three major genes, Vrn1, Q and B1, on the long arm of chromosome 5A of wheat , 1998, Euphytica.