The Evolution of Drug Metabolism

So-called ‘drug-metabolizing enzyme’ (DME) genes have existed on this planet for more than 2.5 billion years and would be more appropriately named ‘effector-metabolizing enzymes’. Genes encoding DMEs have functioned in many fundamental processes in prokaryotes and, more recently, in countless critical life processes in plants and animals. DME genes exist in every eukaryotic cell and in most, if not all, prokaryotes. Over the past decade, it has become clear that each person has their own ‘individual fingerprint’ of unique alleles coding for DMEs. The underlying genetic predisposition of each patient reflects combinations of poor- and extensive-metabolizer phenotypes. If these enzymes cooperate in the same metabolic pathway for any given drug or environmental agent, such ecogenetic variability might be synergistic and could cause 30- to >40-fold differences in activation or degradation. The end result can be large interindividual differences in risk of environmentally caused toxicity or cancer. Human DME gene polymorphisms often show high frequencies of variant alleles. Many factors contribute to persistence of these high frequencies, including a combination of selective pressures involving diet, climate and geography, as well as ‘balanced polymorphisms’ (‘shared benefit’ for the heterozygote). However, the extensive heterogeneity in the human genome currently being discovered suggests many more polymorphisms will occur not only in drug metabolism genes, but in all genes, and exhibiting large gene-by-gene variability.

[1]  M. Sarfarazi,et al.  Identification of three different truncating mutations in cytochrome P4501B1 (CYP1B1) as the principal cause of primary congenital glaucoma (Buphthalmos) in families linked to the GLC3A locus on chromosome 2p21. , 1997, Human molecular genetics.

[2]  J. Diamond Causes of death before birth , 1987, Nature.

[3]  J. Goldstein,et al.  Biochemistry and molecular biology of the human CYP2C subfamily. , 1994, Pharmacogenetics.

[4]  M. Guida,et al.  Characterization of two highly polymorphic human tryptase loci and comparison with a newly discovered monkey tryptase ortholog. , 2000, Pharmacogenetics.

[5]  J. Lawrence Gene transfer, speciation, and the evolution of bacterial genomes. , 1999, Current opinion in microbiology.

[6]  A. Flavell Long terminal repeat retrotransposons jump between species. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[7]  A. Puga,et al.  Regulation of gene expression by reactive oxygen. , 1999, Annual review of pharmacology and toxicology.

[8]  B. Ward,et al.  BRCA1 IVS16+6T-->C is a deleterious mutation that creates an aberrant transcript by activating a cryptic splice donor site. , 1999, American journal of medical genetics.

[9]  D. Shih,et al.  Mice lacking serum paraoxonase are susceptible to organophosphate toxicity and atherosclerosis , 1998, Nature.

[10]  J. M. Smith Evolution of Man , 1962, Nature.

[11]  E. Vesell,et al.  Genetic Variation as a Guide to Drug Development , 1998, Science.

[12]  F. Vogel Moderne Probleme der Humangenetik , 1959 .

[13]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[14]  D W Nebert,et al.  P450 genes: structure, evolution, and regulation. , 1987, Annual review of biochemistry.

[15]  Barrack Er Androgen receptor mutations in prostate cancer. , 1996 .

[16]  N. Shen,et al.  Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis , 1999, Nature Genetics.

[17]  J. Meinwald,et al.  Genetic differences affecting the potency of stereoisomers of halothane. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[18]  I. Mills,et al.  Localization of polymorphic N-acetyltransferase (NAT2) in tissues of inbred mice. , 1997, Pharmacogenetics.

[19]  J. Mol,et al.  A cytochrome b5 is required for full activity of flavonoid 3', 5'-hydroxylase, a cytochrome P450 involved in the formation of blue flower colors. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[20]  P. Kareiva Coevolutionary arms races: is victory possible? , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[21]  R. Tyndale,et al.  The dopamine transporter and cytochrome P45OIID1 (debrisoquine 4-hydroxylase) in brain: resolution and identification of two distinct [3H]GBR-12935 binding proteins. , 1990, Archives of biochemistry and biophysics.

[22]  G. Dover Molecular drive in multigene families: How biological novelties arise, spread and are assimilated , 1986 .

[23]  J. Diamond,et al.  What maintains the frequencies of human genetic diseases? , 1987, Nature.

[24]  Nebert Dw Polymorphisms in drug-metabolizing enzymes: what is their clinical relevance and why do they exist? , 1997, American journal of human genetics.

[25]  J. Eastham,et al.  Androgen receptor mutations in prostate cancer. , 2000, Cancer research.

[26]  D. Nebert,et al.  Cytochrome P450: evolution and functional diversity. , 1994, Progress in liver diseases.

[27]  Miriam Khen,et al.  Odorant signal termination by olfactory UDP glucuronosyl transferase , 1991, Nature.

[28]  D W Nebert,et al.  The P450 gene superfamily: recommended nomenclature. , 1987, DNA.

[29]  Johan Auwerx,et al.  A Pro12Ala substitution in PPARγ2 associated with decreased receptor activity, lower body mass index and improved insulin sensitivity , 1998, Nature Genetics.

[30]  D. Nebert,et al.  Evolution of the P450 gene superfamily: animal-plant 'warfare', molecular drive and human genetic differences in drug oxidation. , 1990, Trends in genetics : TIG.

[31]  L. Trepanier,et al.  Cytosolic arylamine N-acetyltransferase (NAT) deficiency in the dog and other canids due to an absence of NAT genes. , 1997, Biochemical pharmacology.

[32]  L. Bertilsson,et al.  Interethnic factors affecting drug response , 1994 .

[33]  J. Overbaugh,et al.  The origin of mutants , 1988, Nature.

[34]  W B Wood,et al.  Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[35]  P. Donahoe,et al.  Molecular basis of mammalian sexual determination: activation of Müllerian inhibiting substance gene expression by SRY. , 1994, Science.

[36]  J. Byers Bark Beetle Conversion of a Plant Compound to a Sex-Specific Inhibitor of Pheromone Attraction , 1983, Science.

[37]  P. Bosma,et al.  Mutations in the MDR3 gene cause progressive familial intrahepatic cholestasis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[38]  A. Knoll A New Molecular Window on Early Life , 1999, Science.

[39]  D. Nebert,et al.  Role of the aromatic hydrocarbon receptor and [Ah] gene battery in the oxidative stress response, cell cycle control, and apoptosis. , 2000, Biochemical pharmacology.

[40]  J. Cunningham Evolution of Man , 1950, Nature.

[41]  D. Higgins,et al.  Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. , 1994, The EMBO journal.

[42]  J. Stegeman,et al.  Oxidative inactivation of cytochrome P-450 1A (CYP1A) stimulated by 3,3',4,4'-tetrachlorobiphenyl: production of reactive oxygen by vertebrate CYP1As. , 1999, Molecular pharmacology.

[43]  R. Weinshilboum,et al.  Methylation pharmacogenetics: catechol O-methyltransferase, thiopurine methyltransferase, and histamine N-methyltransferase. , 1999, Annual review of pharmacology and toxicology.

[44]  H. Brewer,et al.  Human lipoprotein lipase: the loop covering the catalytic site is essential for interaction with lipid substrates. , 1992, The Journal of biological chemistry.

[45]  E Lai,et al.  A 4-Mb high-density single nucleotide polymorphism-based map around human APOE. , 1998, Genomics.

[46]  P. Vreken,et al.  Smith-Lemli-Opitz syndrome is caused by mutations in the 7-dehydrocholesterol reductase gene. , 1998, American journal of human genetics.

[47]  Y. Sugiyama,et al.  Excretion of GSSG and Glutathione Conjugates Mediated by MRP1 and CM0AT/MRP2 , 1998, Seminars in liver disease.

[48]  D W Nebert,et al.  Proposed role of drug-metabolizing enzymes: regulation of steady state levels of the ligands that effect growth, homeostasis, differentiation, and neuroendocrine functions. , 1991, Molecular endocrinology.

[49]  M. Waterman,et al.  Sex-dependent expression of a transcription factor, Ad4BP, regulating steroidogenic P-450 genes in the gonads during prenatal and postnatal rat development. , 1994, Development.

[50]  D W Nebert,et al.  Human drug-metabolizing enzyme polymorphisms: effects on risk of toxicity and cancer. , 1996, DNA and cell biology.

[51]  A. C. Collins,et al.  Selective mouse breeding for short ethanol sleep time has led to high levels of hepatic aromatic hydrocarbon (Ah) receptor. , 1989, Biochemical pharmacology.

[52]  L. Trepanier,et al.  Deficiency of cytosolic arylamine N-acetylation in the domestic cat and wild felids caused by the presence of a single NAT1-like gene. , 1998, Pharmacogenetics.

[53]  M. Berenbaum,et al.  Toxicity of angular furanocoumarins to swallowtail butterflies: escalation in a coevolutionary arms race? , 1981, Science.

[54]  Receptors find work as guides. , 1995, Science.

[55]  M. Berenbaum,et al.  Black swallowtail (Papilio polyxenes) alleles encode cytochrome P450s that selectively metabolize linear furanocoumarins. , 1994, Archives of biochemistry and biophysics.

[56]  M. Tatematsu,et al.  Effects of omeprazole on gastric mucosal growth and differentiation in developing rat. , 1993, Biochemical and biophysical research communications.

[57]  D W Nebert,et al.  P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. , 1996, Pharmacogenetics.

[58]  S. Wrighton,et al.  Metabolism of phenytoin by the gingiva of normal humans: The possible role of reactive metabolities of phenytoin in the initiation of gingival hyperplasia , 1996, Clinical pharmacology and therapeutics.

[59]  G. Stone,et al.  How aggressive ant-guards assist seed-set in Acacia flowers , 1997, Nature.

[60]  D. Nebert,et al.  Pharmacogenetics and pharmacogenomics: why is this relevant to the clinical geneticist? , 1999, Clinical genetics.

[61]  R. Cook The molecular mechanisms responsible for resistance in plant-pathogen interactions of the gene-for-gene type function more broadly than previously imagined. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[62]  B. Morris,et al.  Association and linkage analyses of glucocorticoid receptor gene markers in essential hypertension. , 1999, Hypertension.

[63]  L. Ryner,et al.  Sex in the '90s , 1995, Cell.

[64]  D. O'reilly,et al.  A baculovirus blocks insect molting by producing ecdysteroid UDP-glucosyl transferase. , 1989, Science.

[65]  R. Lea,et al.  Association of a vitamin D receptor polymorphism with sporadic breast cancer development , 1999, International journal of cancer.

[66]  E. Boerwinkle,et al.  Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase. , 1998, American journal of human genetics.

[67]  D. Nebert Growth signal pathways , 1990, Nature.

[68]  M. J. Coon,et al.  The P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature. , 1993, DNA and cell biology.

[69]  F. Coceani,et al.  Control of the ductus arteriosus--a new function for cytochrome P450, endothelin and nitric oxide. , 1994, Biochemical pharmacology.

[70]  H. Arai,et al.  Miller-Dicker lissencephaly gene encodes a subunit of brain platelet-activating factor acetylhydrolase , 1994, Nature.

[71]  K. Umesono,et al.  BXR, an embryonic orphan nuclear receptor activated by a novel class of endogenous benzoate metabolites. , 1998, Genes & development.

[72]  H. Arai,et al.  Miller-Dieker lissencephaly gene encodes a subunit of brain platelet-activating factor , 1994, Nature.

[73]  V. E. Lewis,et al.  Pinosylvin Methyl Ether Deters Snowshoe Hare Feeding on Green Alder , 1983, Science.

[74]  S. M. Anderson,et al.  Ethanol consumption: Selective breeding in mice , 1981, Behavior genetics.

[75]  S. Kato,et al.  Inactivating mutations in the 25-hydroxyvitamin D3 1alpha-hydroxylase gene in patients with pseudovitamin D-deficiency rickets. , 1998, The New England journal of medicine.

[76]  T. Schultz,et al.  Phylogeny of the attine ant fungi based on analysis of small subunit ribosomal RNA gene sequences. , 1994, Science.

[77]  S. Cole,et al.  Multidrug resistance mediated by the ATP‐binding cassette transporter protein MRP , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.

[78]  U. Meyer Pharmacogenetics: the slow, the rapid, and the ultrarapid. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[79]  P. Simonet,et al.  Horizontal gene transfers in the environment: natural transformation as a putative process for gene transfers between transgenic plants and microorganisms. , 1999, Research in microbiology.

[80]  K. Korach,et al.  Estrogen resistance caused by a mutation in the estrogen-receptor gene in a man. , 1994, The New England journal of medicine.

[81]  Y. Kawamoto,et al.  Cyclopentenone Prostaglandins as Potential Inducers of Phase II Detoxification Enzymes , 2000, The Journal of Biological Chemistry.

[82]  Jasmine Chen,et al.  Identification of a nuclear receptor that is activated by farnesol metabolites , 1995, Cell.

[83]  D. Nebert,et al.  Isolation and characterization of full-length mouse cDNA and genomic clones of 3-methylcholanthrene-inducible cytochrome P1-450 and P3-450. , 1984, Gene.

[84]  D. Nebert Pharmacogenetics: 65 candles on the cake , 1997 .

[85]  R. Roman,et al.  Role of cytochrome P-450 enzymes and metabolites of arachidonic acid in the control of vascular tone. , 1995, Journal of Vascular Research.

[86]  R. Busse,et al.  Cytochrome P450 2C is an EDHF synthase in coronary arteries , 1999, Nature.

[87]  J. Idle,et al.  Pharmacogenetic Phenotyping and Genotyping , 1994, Clinical pharmacokinetics.

[88]  D. Nebert,et al.  Ecogenetics: From Ecology To Health , 1997, Toxicology and industrial health.

[89]  C. Brigati,et al.  A unique carboxy-terminus truncation mutant of the retinoic acid receptor alpha gene associated with a variant marker chromosome in a retinoic acid resistant HL-60 subline. , 1999, Leukemia research.

[90]  A. M. Møller,et al.  Hepatocyte nuclear factor-6: associations between genetic variability and Type II diabetes and between genetic variability and estimates of insulin secretion , 1999, Diabetologia.

[91]  A. Israël A role for phosphorylation and degradation in the control of NF-κB activity , 1995 .

[92]  J. Smart,et al.  Variation in induced CYP1A1 levels: relationship to CYP1A1, Ah receptor and GSTM1 polymorphisms. , 2000, Pharmacogenetics.

[93]  S. Keyse,et al.  Tyrosine kinase inhibition: an approach to drug development. , 1995, Human & experimental toxicology.

[94]  S. Kitareewan,et al.  Phytol metabolites are circulating dietary factors that activate the nuclear receptor RXR. , 1996, Molecular biology of the cell.

[95]  D. Nebert,et al.  Markedly increased constitutive CYP1A1 mRNA levels in the fertilized ovum of the mouse. , 1998, Biochemical and biophysical research communications.

[96]  D. Nebert Polymorphisms in drug-metabolizing enzymes: what is their clinical relevance and why do they exist? , 1997, American journal of human genetics.

[97]  N S Ryder,et al.  Allylamine derivatives: new class of synthetic antifungal agents inhibiting fungal squalene epoxidase. , 1984, Science.

[98]  K. Malik,et al.  Contribution of Ras GTPase/MAP kinase and cytochrome P450 metabolites to deoxycorticosterone-salt-induced hypertension. , 2000, Hypertension.

[99]  J. Pickett,et al.  Wild potato repels aphids by release of aphid alarm pheromone , 1983, Nature.

[100]  D. Nebert Drug-metabolizing enzymes in ligand-modulated transcription. , 1994, Biochemical pharmacology.

[101]  M. Rieder,et al.  Sequence variation in the human angiotensin converting enzyme , 1999, Nature Genetics.

[102]  Jonathan T. Wang,et al.  Genetics of Vitamin D 1α-Hydroxylase Deficiency in 17 Families , 1998 .

[103]  B. Zinman,et al.  The private hepatocyte nuclear factor-1alpha G319S variant is associated with plasma lipoprotein variation in Canadian Oji-Cree. , 2000, Arteriosclerosis, thrombosis, and vascular biology.

[104]  R. Metcalf,et al.  Evolution of diabroticite rootworm beetle (Chrysomelidae) receptors for Cucurbita blossom volatiles. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[105]  M. Cargill Characterization of single-nucleotide polymorphisms in coding regions of human genes , 1999, Nature Genetics.

[106]  R. Hegele,et al.  Association of PON2 variation with birth weight in Trinidadian neonates of South Asian ancestry. , 1999, Pharmacogenetics.

[107]  Roger Y. Tsien,et al.  Emptying of intracellular Ca2+ stores releases a novel small messenger that stimulates Ca2+ influx , 1993, Nature.

[108]  R. Wickramasinghe Biological aspects of cytochrome P450 and associated hydroxylation reactions. , 1975, Enzyme.

[109]  D W Nebert,et al.  Suggestions for the nomenclature of human alleles: relevance to ecogenetics, pharmacogenetics and molecular epidemiology. , 2000, Pharmacogenetics.

[110]  R. Marcus,et al.  The presence of a polymorphism at the translation initiation site of the vitamin D receptor gene is associated with low bone mineral density in postmenopausal mexican‐American women , 1996, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[111]  J. Leebens-Mack,et al.  Forty million years of mutualism: evidence for eocene origin of the yucca-yucca moth association. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[112]  W. Rizzo,et al.  The molecular basis of Sjögren-Larsson syndrome: mutation analysis of the fatty aldehyde dehydrogenase gene. , 1999, American journal of human genetics.

[113]  A. Llerena,et al.  Debrisoquin and mephenytoin hydroxylation phenotypes and CYP2D6 genotype in patients treated with neuroleptic and antidepressant agents , 1993, Clinical pharmacology and therapeutics.

[114]  E. Boerwinkle,et al.  DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene , 1998, Nature Genetics.

[115]  V. Ullrich,et al.  Uncoupling of monooxygenation and electron transport by fluorocarbons in liver microsomes. , 1971, European journal of biochemistry.

[116]  S. Lehrer,et al.  Association of an Estrogen Receptor Variant with Increased Height in Women , 1994, Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme.

[117]  Andrew G Smith,et al.  Vitamin D receptor polymorphisms are associated with altered prognosis in patients with malignant melanoma. , 2000, Clinical cancer research : an official journal of the American Association for Cancer Research.