Mining locus tags in PubMed Central to improve microbial gene annotation
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[1] Jee-Hyub Kim,et al. Database Citation in Full Text Biomedical Articles , 2013, PloS one.
[2] Joseph L. Gabbard,et al. PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species , 2011, Infection and Immunity.
[3] T. Tatusova,et al. Solving the Problem: Genome Annotation Standards before the Data Deluge , 2011, Standards in genomic sciences.
[4] Rick L. Stevens,et al. National Institute of Allergy and Infectious Diseases Bioinformatics Resource Centers: New Assets for Pathogen Informatics , 2007, Infection and Immunity.
[5] Joanne M Stevens,et al. Identification of a bacterial factor required for actin‐based motility of Burkholderia pseudomallei , 2005, Molecular microbiology.
[6] Michael E Wall,et al. Consistency of gene starts among Burkholderia genomes , 2011, BMC Genomics.
[7] Alfonso Valencia,et al. How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience , 2012, Database J. Biol. Databases Curation.
[8] Winston A Hide,et al. Big data: The future of biocuration , 2008, Nature.
[9] D. Rebholz-Schuhmann,et al. Text-mining solutions for biomedical research: enabling integrative biology , 2012, Nature Reviews Genetics.
[10] Mark S. Thomas,et al. In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. , 2007, Microbiology.
[11] Rick L. Stevens,et al. The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.
[12] M. Stevens,et al. Autotransporters and Their Role in the Virulence of Burkholderia pseudomallei and Burkholderia mallei , 2011, Front. Microbio..
[13] I-Min A. Chen,et al. The integrated microbial genomes system: an expanding comparative analysis resource , 2009, Nucleic Acids Res..
[14] Casey M. Bergman,et al. Annotating genes and genomes with DNA sequences extracted from biomedical articles , 2011, Bioinform..
[15] M. Schell,et al. Comparative Genomics and an Insect Model Rapidly Identify Novel Virulence Genes of Burkholderia mallei , 2008, Journal of bacteriology.
[16] Rolf Apweiler,et al. Linking publication, gene and protein data , 2006, Nature Cell Biology.
[17] Richard Van Noorden. Trouble at the text mine , 2012, Nature.
[18] M. Gerner,et al. pubmed2ensembl: A Resource for Mining the Biological Literature on Genes , 2011, PloS one.
[19] L. Grivell,et al. Text mining for biology - the way forward: opinions from leading scientists , 2008, Genome Biology.
[20] Zhiyong Lu,et al. PubMed and beyond: a survey of web tools for searching biomedical literature , 2011, Database J. Biol. Databases Curation.
[21] Samuel I. Miller,et al. Structure of a Burkholderia pseudomallei Trimeric Autotransporter Adhesin Head , 2010, PloS one.
[22] Zhiyong Lu,et al. Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE , 2012, Database J. Biol. Databases Curation.
[23] Seth Schobel,et al. Pathema: a clade-specific bioinformatics resource center for pathogen research , 2010, Nucleic Acids Res..
[24] Philip E. Bourne,et al. Will a Biological Database Be Different from a Biological Journal? , 2005, PLoS Comput. Biol..
[25] Raymond Lo,et al. The Burkholderia Genome Database: facilitating flexible queries and comparative analyses , 2008, Bioinform..
[26] A. Talaat,et al. Genomic Islands as a Marker to Differentiate between Clinical and Environmental Burkholderia pseudomallei , 2012, PloS one.
[27] Wing-Kin Sung,et al. A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence , 2010, PLoS pathogens.
[28] Senay Kafkas,et al. Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles , 2015, J. Biomed. Semant..
[29] J. Mrázek,et al. Type VI secretion is a major virulence determinant in Burkholderia mallei , 2007, Molecular microbiology.
[30] D. Rice,et al. A Burkholderia pseudomallei Toxin Inhibits Helicase Activity of Translation Factor eIF4A , 2011, Science.
[31] F. Taieb,et al. Cycle Inhibiting Factors (CIFs) Are a Growing Family of Functional Cyclomodulins Present in Invertebrate and Mammal Bacterial Pathogens , 2009, PloS one.
[32] Eloisa Vargiu,et al. Literature Retrieval and Mining in Bioinformatics: State of the Art and Challenges , 2012, Adv. Bioinformatics.
[33] Rachel Balder,et al. Identification of Burkholderia mallei and Burkholderia pseudomallei adhesins for human respiratory epithelial cells , 2010, BMC Microbiology.