Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13

[1]  E. Sonnleitner,et al.  Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa , 2009, Proceedings of the National Academy of Sciences.

[2]  S. Marzi,et al.  The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation , 2009, Nucleic acids research.

[3]  J. R. van der Meer,et al.  Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13 , 2009, Molecular microbiology.

[4]  Masaki Shintani,et al.  High-resolution mapping of plasmid transcriptomes in different host bacteria , 2009, BMC Genomics.

[5]  J. R. van der Meer,et al.  Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas , 2008, Proceedings of the National Academy of Sciences.

[6]  D. Crook,et al.  Genomic islands: tools of bacterial horizontal gene transfer and evolution , 2008, FEMS microbiology reviews.

[7]  J. Klockgether,et al.  Transcript profiling of the Pseudomonas aeruginosa genomic islands PAGI-2 and pKLC102. , 2008, Microbiology.

[8]  J. R. van der Meer,et al.  Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1 , 2008, Proceedings of the National Academy of Sciences.

[9]  B. Birren,et al.  Dynamics of Pseudomonas aeruginosa genome evolution , 2008, Proceedings of the National Academy of Sciences.

[10]  J. Keasling,et al.  Global analysis of host response to induction of a latent bacteriophage , 2007, BMC Microbiology.

[11]  Christopher M Thomas Transcription regulatory circuits in bacterial plasmids. , 2006, Biochemical Society transactions.

[12]  D. Ferguson,et al.  Novel Type IV Secretion System Involved in Propagation of Genomic Islands , 2006, Journal of bacteriology.

[13]  C. Ronson,et al.  Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS , 2006, Molecular microbiology.

[14]  A. Pühler,et al.  The clc Element of Pseudomonas sp. Strain B13, a Genomic Island with Various Catabolic Properties , 2006, Journal of bacteriology.

[15]  E. Cascales,et al.  Biogenesis, architecture, and function of bacterial type IV secretion systems. , 2005, Annual review of microbiology.

[16]  Laura S. Frost,et al.  Mobile genetic elements: the agents of open source evolution , 2005, Nature Reviews Microbiology.

[17]  J. Townsend,et al.  Horizontal gene transfer, genome innovation and evolution , 2005, Nature Reviews Microbiology.

[18]  P. François,et al.  A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus , 2005, BMC Genomics.

[19]  Derrick W. Crook,et al.  Transferable Antibiotic Resistance Elements in Haemophilus influenzae Share a Common Evolutionary Origin with a Diverse Family of Syntenic Genomic Islands , 2004, Journal of bacteriology.

[20]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[21]  S. Molin,et al.  Transcriptional regulation of pWW0 transfer genes in Pseudomonas putida KT2440. , 2004, Plasmid.

[22]  Ulrich Dobrindt,et al.  Genomic islands in pathogenic and environmental microorganisms , 2004, Nature Reviews Microbiology.

[23]  J. García,et al.  Genetic characterization of the styrene lower catabolic pathway of Pseudomonas sp. strain Y2. , 2003, Gene.

[24]  M. Waldor,et al.  Control of SXT Integration and Excision , 2003, Journal of bacteriology.

[25]  J. R. van der Meer,et al.  Unusual Integrase Gene Expression on the clc Genomic Island in Pseudomonas sp. Strain B13 , 2003, Journal of bacteriology.

[26]  M. Zuker,et al.  OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. , 2003, Nucleic acids research.

[27]  Rafael A Irizarry,et al.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.

[28]  John W. Beaber,et al.  Genomic and Functional Analyses of SXT, an Integrating Antibiotic Resistance Gene Transfer Element Derived from Vibrio cholerae , 2002, Journal of bacteriology.

[29]  J. Hacker,et al.  Ecological fitness, genomic islands and bacterial pathogenicity , 2001, EMBO reports.

[30]  A. Zehnder,et al.  Int-B13, an Unusual Site-Specific Recombinase of the Bacteriophage P4 Integrase Family, Is Responsible for Chromosomal Insertion of the 105-Kilobase clc Element ofPseudomonas sp. Strain B13 , 1998, Journal of bacteriology.

[31]  J. R. van der Meer,et al.  Chromosomal Integration, Tandem Amplification, and Deamplification in Pseudomonas putida F1 of a 105-Kilobase Genetic Element Containing the Chlorocatechol Degradative Genes from Pseudomonas sp. Strain B13 , 1998, Journal of bacteriology.

[32]  Meer,et al.  Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes , 1996, Journal of bacteriology.

[33]  Dm Jones Manual of Methods for General Bacteriology , 1981 .

[34]  John W. Beaber,et al.  SOS response promotes horizontal dissemination of antibiotic resistance genes , 2004, Nature.

[35]  M. Adamczyk,et al.  Spread and survival of promiscuous IncP-1 plasmids. , 2003, Acta biochimica Polonica.

[36]  Ariane Toussaint,et al.  Mobile elements as a combination of functional modules. , 2002, Plasmid.