Bioinspired supramolecular engineering of self-assembling immunofibers for high affinity binding of immunoglobulin G.

Many one-dimensional (1D) nanostructures are constructed by self-assembly of peptides or peptide conjugates containing a short β-sheet sequence as the core building motif essential for the intermolecular hydrogen bonding that promotes directional, anisotropic growth of the resultant assemblies. While this molecular engineering strategy has led to the successful production of a plethora of bioactive filamentous β-sheet assemblies for interfacing with biomolecules and cells, concerns associated with effective presentation of α-helical epitopes and their function preservation have yet to be resolved. In this context, we report on the direct conjugation of the protein A mimicking peptide Z33, a motif containing two α-helices, to linear hydrocarbons to create self-assembling immuno-amphiphiles (IAs). Our results suggest that the resulting amphiphilic peptides can, despite lacking the essential β-sheet segment, effectively associate under physiological conditions into supramolecular immunofibers (IFs) while preserving their native α-helical conformation. Isothermal titration calorimetry (ITC) measurements confirmed that these self-assembling immunofibers can bind to the human immunoglobulin G class 1 (IgG1) with high specificity at pH 7.4, but with significantly weakened binding at pH 2.8. We further demonstrated the accessibility of Z33 ligand in the immunofibers using transmission electron microscopy (TEM) and confocal imaging. We believe these results shed important light into the supramolecular engineering of α-helical peptides into filamentous assemblies that may possess an important potential for antibody isolation.

[1]  Pim W. J. M. Frederix,et al.  Aromatic peptide amphiphiles: significance of the Fmoc moiety. , 2013, Chemical communications.

[2]  Matthew Tirrell,et al.  Effect of the peptide secondary structure on the peptide amphiphile supramolecular structure and interactions. , 2011, Langmuir : the ACS journal of surfaces and colloids.

[3]  R. L. Baldwin,et al.  Unusually stable helix formation in short alanine-based peptides. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Duncan Low,et al.  Future of antibody purification. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[5]  Joel H Collier,et al.  Modulating adaptive immune responses to peptide self-assemblies. , 2012, ACS nano.

[6]  Gorjan Alagic,et al.  #p , 2019, Quantum information & computation.

[7]  Gregg B. Fields,et al.  MINIMAL LIPIDATION STABILIZES PROTEIN-LIKE MOLECULAR ARCHITECTURE , 1998 .

[8]  E. Toone,et al.  Exploring variation in binding of Protein A and Protein G to immunoglobulin type G by isothermal titration calorimetry , 2011, Journal of molecular recognition : JMR.

[9]  A. Velázquez‐Campoy,et al.  Characterisation of ligand binding by calorimetry , 2011 .

[10]  Adam J. Makarucha,et al.  Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease. , 2015, Chemistry of materials : a publication of the American Chemical Society.

[11]  Honggang Cui,et al.  Amino Acid Sequence in Constitutionally Isomeric Tetrapeptide Amphiphiles Dictates Architecture of One-Dimensional Nanostructures , 2014, Journal of the American Chemical Society.

[12]  Handan Acar,et al.  Self‐assembling peptide‐based building blocks in medical applications , 2017, Advanced drug delivery reviews.

[13]  S. Stupp,et al.  Self-Assembly and Mineralization of Peptide-Amphiphile Nanofibers , 2001, Science.

[14]  L. Chow,et al.  Peptide‐Directed Spatial Organization of Biomolecules in Dynamic Gradient Scaffolds , 2014, Advanced healthcare materials.

[15]  Brian Hubbard,et al.  Downstream processing of monoclonal antibodies--application of platform approaches. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[16]  P. Cuatrecasas,et al.  Protein purification by affinity chromatography. Derivatizations of agarose and polyacrylamide beads. , 1970, The Journal of biological chemistry.

[17]  J F Brandts,et al.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter. , 1989, Analytical biochemistry.

[18]  Matthew Tirrell,et al.  Active targeting of early and mid-stage atherosclerotic plaques using self-assembled peptide amphiphile micelles. , 2014, Biomaterials.

[19]  A. Braisted,et al.  Minimizing a binding domain from protein A. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[20]  G. Schatz,et al.  Energy landscapes and function of supramolecular systems , 2015, Nature materials.

[21]  A Kolinski,et al.  Folding simulations and computer redesign of protein A three‐helix bundle motifs , 1996, Proteins.

[22]  E. Holmgren,et al.  Human immunodeficiency viral protease is catalytically active as a fusion protein: characterization of the fusion and native enzymes produced in Escherichia coli. , 1990, Archives of biochemistry and biophysics.

[23]  Scott H. Medina,et al.  A multi-phase transitioning peptide hydrogel for suturing ultra-small vessels , 2015, Nature nanotechnology.

[24]  D. Pochan,et al.  Encapsulation of curcumin in self-assembling peptide hydrogels as injectable drug delivery vehicles. , 2011, Biomaterials.

[25]  Honggang Cui,et al.  Building Nanostructures with Drugs. , 2016, Nano today.

[26]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[27]  D. Ecker,et al.  The therapeutic monoclonal antibody market , 2015, mAbs.

[28]  S. Hober,et al.  Protein A chromatography for antibody purification. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[29]  M. Uhlén,et al.  A synthetic IgG-binding domain based on staphylococcal protein A. , 1987, Protein engineering.

[30]  A. Mittermaier,et al.  Binding mechanism of an SH3 domain studied by NMR and ITC. , 2009, Journal of the American Chemical Society.

[31]  I. Hamley Lipopeptides: From Self‐Assembly to Bioactivity , 2015 .

[32]  Jan C. M. van Hest,et al.  Peptide- and Protein-Based Hydrogels , 2012 .

[33]  J. Deisenhofer Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution. , 1981, Biochemistry.

[34]  J. V. Hest,et al.  Sensing cell adhesion using polydiacetylene-containing peptide amphiphile fibres. , 2015, Journal of materials chemistry. B.

[35]  M. Uhlén,et al.  Staphylococcal protein A consists of five IgG-binding domains. , 1986, European journal of biochemistry.

[36]  Jan C M van Hest,et al.  Thermodynamic investigation of Z33-antibody interaction leads to selective purification of human antibodies. , 2014, Journal of biotechnology.

[37]  Tsuyoshi Murata,et al.  {m , 1934, ACML.

[38]  Bing Xu,et al.  Aromatic–Aromatic Interactions Enable α-Helix to β-Sheet Transition of Peptides to Form Supramolecular Hydrogels , 2016, Journal of the American Chemical Society.

[39]  Rami W. Chakroun,et al.  Nanotherapeutic systems for local treatment of brain tumors. , 2018, Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology.

[40]  H. Cui,et al.  Supramolecular nanostructures as drug carriers , 2015 .

[41]  Honggang Cui,et al.  Self‐assembly of peptide amphiphiles: From molecules to nanostructures to biomaterials , 2010, Biopolymers.

[42]  Timothy P. Lodge,et al.  Block Copolymers: Past Successes and Future Challenges , 2003 .

[43]  S. Stupp,et al.  Self-assembling nanostructures to deliver angiogenic factors to pancreatic islets. , 2010, Biomaterials.

[44]  Ian W Hamley,et al.  Lipopeptides: from self-assembly to bioactivity. , 2015, Chemical communications.

[45]  Molly M. Stevens,et al.  Controlled Sub-Nanometer Epitope Spacing in a Three-Dimensional Self-Assembled Peptide Hydrogel. , 2016, ACS nano.

[46]  Matthew Tirrell,et al.  Synthetic lipidation of peptides and amino acids: monolayer structure and properties. , 1995 .

[47]  이화영 X , 1960, Chinese Plants Names Index 2000-2009.

[48]  Daniela Kalafatovic,et al.  Exploring the sequence space for (tri-)peptide self-assembly to design and discover new hydrogels. , 2015, Nature chemistry.

[49]  Krista L. Niece,et al.  Selective Differentiation of Neural Progenitor Cells by High-Epitope Density Nanofibers , 2004, Science.

[50]  Jie Zhou,et al.  Enzyme-Instructed Self-Assembly of Small d-Peptides as a Multiple-Step Process for Selectively Killing Cancer Cells , 2016, Journal of the American Chemical Society.

[51]  Z. Li,et al.  Conformation Preservation of α-Helical Peptides within Supramolecular Filamentous Assemblies. , 2017, Biomacromolecules.

[52]  I. Hyodo,et al.  EpCAM‐ and EGFR‐targeted selective gene therapy for biliary cancers using Z33‐fiber‐modified adenovirus , 2011, International journal of cancer.

[53]  Matthew Tirrell,et al.  Self-assembling amphiphiles for construction of protein molecular architecture , 1996 .

[54]  Klaus Huse,et al.  Purification of antibodies by affinity chromatography. , 2002, Journal of biochemical and biophysical methods.

[55]  A. Denizli Purification of Antibodies by Affinity Chromatography , 2011 .

[56]  Samuel I Stupp,et al.  Development of bioactive peptide amphiphiles for therapeutic cell delivery. , 2010, Acta biomaterialia.

[57]  M. Uhlén,et al.  Mutational analysis of the interaction between staphylococcal protein A and human IgG1. , 1993, Protein engineering.

[58]  H. Cui,et al.  Tuning Cellular Uptake of Molecular Probes by Rational Design of Their Assembly into Supramolecular Nanoprobes. , 2016, Journal of the American Chemical Society.

[59]  Caleb F. Anderson,et al.  Protease-Sensitive Nanomaterials for Cancer Therapeutics and Imaging , 2017, Industrial & engineering chemistry research.

[60]  M. Starovasnik,et al.  Structural mimicry of a native protein by a minimized binding domain. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[61]  G. Fields,et al.  Induction of protein-like molecular architecture by monoalkyl hydrocarbon chains. , 2000, Biopolymers.

[62]  Y. Talmon,et al.  Dependence of aggregate morphology on structure of dimeric surfactants , 1993, Nature.

[63]  P. Christianen,et al.  Patterns of diacetylene-containing peptide amphiphiles using polarization holography. , 2009, Journal of the American Chemical Society.

[64]  V. Kickhoefer,et al.  Targeting vault nanoparticles to specific cell surface receptors. , 2009, ACS nano.

[65]  Honggang Cui,et al.  Supramolecular nanostructures formed by anticancer drug assembly. , 2013, Journal of the American Chemical Society.

[66]  M. Tirrell,et al.  Modular Peptide Amphiphile Micelles Improving an Antibody-Mediated Immune Response to Group A Streptococcus. , 2017, ACS Biomaterials Science & Engineering.

[67]  H. Cui,et al.  Supramolecular Crafting of Self-Assembling Camptothecin Prodrugs with Enhanced Efficacy against Primary Cancer Cells , 2016, Theranostics.

[68]  Krista L. Niece,et al.  Self-assembly combining two bioactive peptide-amphiphile molecules into nanofibers by electrostatic attraction. , 2003, Journal of the American Chemical Society.

[69]  C. M. Bates,et al.  Multiblock Polymers: Panacea or Pandora’s Box? , 2012, Science.

[70]  Feng Chen,et al.  pH and Amphiphilic Structure Direct Supramolecular Behavior in Biofunctional Assemblies , 2014, Journal of the American Chemical Society.

[71]  Matthew Tirrell,et al.  Self‐Assembled Peptide Amphiphile Micelles Containing a Cytotoxic T‐Cell Epitope Promote a Protective Immune Response In Vivo , 2012, Advanced materials.

[72]  L. Jaenicke A rapid micromethod for the determination of nitrogen and phosphate in biological material. , 1974, Analytical biochemistry.

[73]  Jie Zhou,et al.  Supramolecular biofunctional materials. , 2017, Biomaterials.

[74]  Matthew Tirrell,et al.  Monocyte‐Targeting Supramolecular Micellar Assemblies: A Molecular Diagnostic Tool for Atherosclerosis , 2015, Advanced healthcare materials.