Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert.

Two gamma- and UV-radiation-tolerant, Gram-negative, rod-shaped bacterial strains, VCD115T and VCD117, were isolated from a mixture of sand samples collected in the Sahara Desert in Morocco and Tunisia, after exposure of the sand to 15 kGy gamma radiation. Phylogenetic analysis based on 16S rRNA gene sequences and DNA-DNA hybridizations showed that VCD115T and VCD117 are members of a novel species belonging to the genus Deinococcus, with Deinococcus grandis as its closest relative. The DNA G+C contents of VCD115T and VCD117 are 59.8 and 60.6 mol%, respectively. The major fatty acids (straight-chain 15 : 1, 16 : 1, 17 : 1 and 16 : 0), polar lipids (dominated by phosphoglycolipids and glycolipids) and quinone type (MK-8) support the affiliation to the genus Deinococcus. The strains did not grow on rich medium such as trypticase soy broth (TSB), but did grow as whitish colonies on tenfold-diluted TSB. The genotypic and phenotypic properties allowed differentiation of VCD115T and VCD117 from recognized Deinococcus species. Strains VCD115T and VCD117 are therefore identified as representing a novel species, for which the name Deinococcus deserti sp. nov. is proposed, with the type strain VCD115T (=DSM 17065T=LMG 22923T).

[1]  E. Stackebrandt,et al.  Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica. , 2004, Systematic and applied microbiology.

[2]  Scott N Peterson,et al.  Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme Radioresistance , 2004, Genetics.

[3]  S. Shivaji,et al.  Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India. , 2004, International journal of systematic and evolutionary microbiology.

[4]  J. Wall,et al.  Characterization of Rhodopseudomonas capsulata , 1975, Archives of Microbiology.

[5]  I. Narumi Unlocking radiation resistance mechanisms: still a long way to go. , 2003, Trends in microbiology.

[6]  Using DNA microarray data to understand the ionizing radiation resistance of Deinococcus radiodurans. , 2003, Trends in biotechnology.

[7]  James K. Fredrickson,et al.  Engineering Deinococcus geothermalis for Bioremediation of High-Temperature Radioactive Waste Environments , 2003, Applied and Environmental Microbiology.

[8]  Eugene V Koonin,et al.  Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[9]  I. Mian,et al.  The IrrE Protein of Deinococcus radiodurans R1 Is a Novel Regulator of recA Expression , 2002, Journal of bacteriology.

[10]  Ronald J Moore,et al.  Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[11]  P. de Vos,et al.  DNA-DNA hybridization study of Bradyrhizobium strains. , 2001, International journal of systematic and evolutionary microbiology.

[12]  E. Koonin,et al.  Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics , 2001, Microbiology and Molecular Biology Reviews.

[13]  S. Salzberg,et al.  Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. , 1999, Science.

[14]  I. Narumi,et al.  The Deinococcus radiodurans uvr A gene: identification of mutation sites in two mitomycin-sensitive strains and the first discovery of insertion sequence element from deinobacteria. , 1997, Gene.

[15]  F. Rainey,et al.  Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. , 1997, International journal of systematic bacteriology.

[16]  E. Stackebrandt,et al.  Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. , 1997, International journal of systematic bacteriology.

[17]  O Gascuel,et al.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. , 1997, Molecular biology and evolution.

[18]  Manolo Gouy,et al.  SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny , 1996, Comput. Appl. Biosci..

[19]  V. Mattimore,et al.  Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation , 1996, Journal of bacteriology.

[20]  M. Gouy,et al.  WWW-query: an on-line retrieval system for biological sequence banks. , 1996, Biochimie.

[21]  Takayuki Ezaki,et al.  Fluorometric Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization in Microdilution Wells as an Alternative to Membrane Filter Hybridization in which Radioisotopes Are Used To Determine Genetic Relatedness among Bacterial Strains , 1989 .

[22]  O. Kandler,et al.  International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. , 1987, Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology.

[23]  R. Murray,et al.  Unusual polar lipids of Micrococcus radiodurans strain Sark. , 1980, Canadian journal of microbiology.

[24]  R. Owen,et al.  The thermal denaturation of partly purified bacterial deoxyribonucleic acid and its taxonomic applications. , 1976, The Journal of applied bacteriology.

[25]  P. Doty,et al.  Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. , 1962, Journal of molecular biology.